Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra016720.1-P | Field mustard | nucleus | 97.95 | 98.24 |
| CDY34554 | Canola | nucleus | 88.01 | 88.01 |
| CDX98136 | Canola | nucleus | 60.53 | 63.89 |
| CDY36418 | Canola | nucleus | 58.48 | 61.92 |
| AT1G13920.4 | Thale cress | nucleus | 65.79 | 59.52 |
| CDX95945 | Canola | cytosol, mitochondrion, nucleus | 13.45 | 42.99 |
| CDY44060 | Canola | nucleus | 12.57 | 40.19 |
| KRH70859 | Soybean | nucleus | 28.95 | 37.22 |
| KRH74999 | Soybean | nucleus | 28.36 | 36.47 |
| KRH50535 | Soybean | nucleus | 33.04 | 34.04 |
| KRG89501 | Soybean | nucleus | 33.04 | 33.24 |
| Zm00001d015411_P001 | Maize | nucleus | 14.91 | 29.65 |
| VIT_01s0011g00820.t01 | Wine grape | nucleus | 32.16 | 29.18 |
| Solyc05g012550.2.1 | Tomato | nucleus | 30.41 | 27.01 |
| CDY40911 | Canola | endoplasmic reticulum, mitochondrion, plastid | 16.08 | 26.44 |
| Solyc04g005470.2.1 | Tomato | nucleus | 23.68 | 25.71 |
| OQU75583 | Sorghum | cytosol | 21.05 | 25.71 |
| KXG39897 | Sorghum | cytosol | 23.68 | 25.39 |
| TraesCS1D01G058700.1 | Wheat | nucleus | 26.02 | 25.36 |
| TraesCS1A01G057900.1 | Wheat | nucleus | 25.44 | 24.79 |
| HORVU1Hr1G011610.2 | Barley | cytosol | 25.15 | 24.5 |
| TraesCS1B01G075600.1 | Wheat | nucleus | 25.15 | 24.5 |
| GSMUA_Achr2P19260_001 | Banana | nucleus | 21.93 | 24.43 |
| Zm00001d014455_P001 | Maize | nucleus | 23.98 | 23.63 |
| TraesCS4D01G250800.1 | Wheat | nucleus | 21.05 | 23.0 |
| Zm00001d028185_P002 | Maize | cytosol | 21.64 | 22.91 |
| TraesCS4A01G053800.2 | Wheat | cytosol | 20.76 | 22.76 |
| EER90227 | Sorghum | nucleus | 24.85 | 22.73 |
| TraesCS4B01G250900.1 | Wheat | cytosol | 20.76 | 22.68 |
| Os03t0211500-01 | Rice | plasma membrane | 19.88 | 21.79 |
| Zm00001d048109_P002 | Maize | mitochondrion | 22.51 | 21.51 |
| Os10t0325400-01 | Rice | cytosol, nucleus | 23.98 | 20.76 |
| HORVU4Hr1G068900.21 | Barley | cytosol | 17.25 | 18.67 |
| CDY23073 | Canola | nucleus | 16.96 | 8.9 |
| CDY02159 | Canola | extracellular, golgi | 14.04 | 6.59 |
Protein Annotations
| EnsemblPlants:CDX96876 | EnsemblPlantsGene:GSBRNA2T00103121001 | InterPro:Remorin_C | ncoils:Coil | PANTHER:PTHR31471 | PANTHER:PTHR31471:SF5 |
| PFAM:PF03763 | ProteinID:CDX96876 | ProteinID:CDX96876.1 | SEG:seg | UniParc:UPI0004EE9D85 | MapMan:35.2 |
Description
BnaA08g24190D
Coordinates
chrLK031895:-:1326996..1328713
Molecular Weight (calculated)
39068.0 Da
IEP (calculated)
10.645
GRAVY (calculated)
-1.261
Length
342 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSLIKQTRR RHPAARVKTN EVDSATREKN VPPRKSVSFE EDKKKPSNWL EKQFSRQMSD QSYDSISDMD YASAVAATAY AITTFEETRL ESYHSGREDA
101: FPLEEPRSLS RRFSSGDLSF KEPELNDNKL PTPKSPVRKS SSVKKTPTFS MDFGGDHTRG REDSGEKHER PRKPASVVSK PPGAPMQIQP PVRTRSERRA
201: LPPPPPPLTP SPLRLPPRET KRPSSGGTSR KDDSTADAWE KAELAKIKAR YEKLNRKIDL WEAKKRDKAR RKLDKSEQSE QEQRRKRGLQ RFREDMEYIE
301: HIAAGARAQA EKQRQNEELK VKERAGIVRK TGKIPGKACS CF
101: FPLEEPRSLS RRFSSGDLSF KEPELNDNKL PTPKSPVRKS SSVKKTPTFS MDFGGDHTRG REDSGEKHER PRKPASVVSK PPGAPMQIQP PVRTRSERRA
201: LPPPPPPLTP SPLRLPPRET KRPSSGGTSR KDDSTADAWE KAELAKIKAR YEKLNRKIDL WEAKKRDKAR RKLDKSEQSE QEQRRKRGLQ RFREDMEYIE
301: HIAAGARAQA EKQRQNEELK VKERAGIVRK TGKIPGKACS CF
001: MKLACKAIIS KTLKKPKPSN TSSQVLPPYF SLKMDTLIKQ TRRKHPASQE KIREVGSSTR EKKVSARKSV SFKEDKKKPS NWLQKQFSRQ MSGQSYDPIG
101: EMDHAAAVAA TAYAIATFEE TWLENYHSGL ELGPSSSRSK SRSEELLPLE EPRSLSRRFS GQLSFIDSET KDHKPPTLKS PMRKSSSVKK TFSMNLMGDH
201: TKQNQDSEEK HERQRKPVSE PPRIQPPLRT RSEPRAPPPP PPPLLSPSPL RLPPRETKRQ SSEHTSRKDD STADAWEKAE LSKIKARYEK LNRKIDLWEA
301: KKREKARRKL DISEQSELEQ RRKRGLQRFR EDTEYIEQIA AGARAQAEKD RQSKEFKVKE KAGVIRSTGK LPGNACCF
101: EMDHAAAVAA TAYAIATFEE TWLENYHSGL ELGPSSSRSK SRSEELLPLE EPRSLSRRFS GQLSFIDSET KDHKPPTLKS PMRKSSSVKK TFSMNLMGDH
201: TKQNQDSEEK HERQRKPVSE PPRIQPPLRT RSEPRAPPPP PPPLLSPSPL RLPPRETKRQ SSEHTSRKDD STADAWEKAE LSKIKARYEK LNRKIDLWEA
301: KKREKARRKL DISEQSELEQ RRKRGLQRFR EDTEYIEQIA AGARAQAEKD RQSKEFKVKE KAGVIRSTGK LPGNACCF
Arabidopsis Description
Remorin family protein [Source:TAIR;Acc:AT1G13920]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.