Subcellular Localization
min:
: max
Winner_takes_all: nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- endoplasmic reticulum 1
- cytosol 1
- plasma membrane 1
- mitochondrion 1
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os03t0854800-03 | |
| Os10t0577800-01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G61270.1 | Os03t0854800-03 | AT1G32230.1 | 19548978 |
| AT5G61270.1 | Os10t0577800-01 | AT1G32230.1 | 19548978 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU1Hr1G011610.2 | Barley | cytosol | 48.1 | 54.13 |
| TraesCS1A01G057900.1 | Wheat | nucleus | 47.59 | 53.56 |
| TraesCS1B01G075600.1 | Wheat | nucleus | 47.34 | 53.28 |
| TraesCS1D01G058700.1 | Wheat | nucleus | 47.09 | 52.99 |
| Zm00001d014455_P001 | Maize | nucleus | 37.97 | 43.23 |
| EER90227 | Sorghum | nucleus | 40.51 | 42.78 |
| Os03t0211500-01 | Rice | plasma membrane | 30.63 | 38.78 |
| Bra004372.1-P | Field mustard | cytosol, mitochondrion, nucleus | 9.37 | 34.58 |
| AT1G69325.1 | Thale cress | nucleus | 10.38 | 34.17 |
| Bra038312.1-P | Field mustard | nucleus | 9.11 | 33.64 |
| CDX95945 | Canola | cytosol, mitochondrion, nucleus | 9.11 | 33.64 |
| CDY44060 | Canola | nucleus | 9.11 | 33.64 |
| GSMUA_Achr2P19260_001 | Banana | nucleus | 22.78 | 29.32 |
| KRH70859 | Soybean | nucleus | 18.99 | 28.2 |
| KRG89501 | Soybean | nucleus | 24.05 | 27.94 |
| KRH50535 | Soybean | nucleus | 23.29 | 27.71 |
| KRH74999 | Soybean | nucleus | 18.23 | 27.07 |
| Solyc05g012550.2.1 | Tomato | nucleus | 25.06 | 25.71 |
| CDX98136 | Canola | nucleus | 20.51 | 25.0 |
| Bra019698.1-P | Field mustard | nucleus | 20.25 | 24.69 |
| CDY36418 | Canola | nucleus | 20.0 | 24.46 |
| CDY34554 | Canola | nucleus | 21.01 | 24.27 |
| Bra016720.1-P | Field mustard | nucleus | 20.76 | 24.05 |
| CDX96876 | Canola | nucleus | 20.76 | 23.98 |
| VIT_01s0011g00820.t01 | Wine grape | nucleus | 22.53 | 23.61 |
| CDY40911 | Canola | endoplasmic reticulum, mitochondrion, plastid | 12.15 | 23.08 |
| AT1G13920.4 | Thale cress | nucleus | 21.01 | 21.96 |
| Solyc06g069590.2.1 | Tomato | cytosol | 10.89 | 21.94 |
| Solyc04g005470.2.1 | Tomato | nucleus | 17.22 | 21.59 |
| VIT_17s0000g06920.t01 | Wine grape | nucleus | 11.65 | 20.26 |
| KRH63271 | Soybean | cytosol | 7.85 | 19.02 |
| KRH54632 | Soybean | nucleus | 9.37 | 14.23 |
| KRH03090 | Soybean | nucleus | 8.61 | 13.39 |
| AT5G61280.1 | Thale cress | nucleus | 8.61 | 12.93 |
| KRH56866 | Soybean | nucleus | 8.1 | 12.08 |
| CDY23073 | Canola | nucleus | 10.89 | 6.6 |
| Bra012972.1-P | Field mustard | nucleus | 9.62 | 5.67 |
| CDY02159 | Canola | extracellular, golgi | 8.1 | 4.4 |
| AT5G61270.1 | Thale cress | nucleus | 1.27 | 1.37 |
Protein Annotations
| EnsemblPlants:Os10t0325400-01 | EnsemblPlantsGene:Os10g0325400 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0016491 | GO:GO:0055114 | InterPro:Remorin_C | ncoils:Coil | PANTHER:PTHR31471 | PANTHER:PTHR31471:SF8 |
| PFAM:PF03763 | ProteinID:BAT10327.1 | SEG:seg | UniParc:UPI000393B2FF | UniProt:A0A0P0XTC3 | MapMan:35.2 |
Description
REMORIN 0.2Remorin, C-terminal domain containing protein. (Os10t0325400-01)
Coordinates
chr10:+:9000705..9002772
Molecular Weight (calculated)
44684.1 Da
IEP (calculated)
10.099
GRAVY (calculated)
-1.023
Length
395 amino acids
Sequence
(BLAST)
(BLAST)
001: LTYKLILNVE CHRPRNKIER SDFLVQEQED QGGNQTIRMQ PQQGRFFGRE EMSNGVEYDA AYAATVAAVA YAIAAKEEEK QATEETRVKK KLTSEKKPVA
101: NDEPSTTPTL KLPPNRQGIL KRPRQTEGSR ITRRFSGKEI VPDEEDDGLE ANVSVRRPVR TAQKIPEGGI SGQNMVGKVL DSVPSIRKAP SFAKPLPEKK
201: GSMKFEQEQA IPTVPPNVRP TALFPREKKE SKKFDQDQAI PRVPPDVRPT ASFSREKKES KKFEQDKANQ MPSLASAPTS SYSSEAEAMA DTWEKEKMAK
301: IKKQYNMTMD TIVEWEAEKK AKAKRQMELK EGDNSERKRE KALEEYNDEI TRINKVAAAS RLTAEEKRRS AERKVREKAE RIRVTGKLPG ACGCF
101: NDEPSTTPTL KLPPNRQGIL KRPRQTEGSR ITRRFSGKEI VPDEEDDGLE ANVSVRRPVR TAQKIPEGGI SGQNMVGKVL DSVPSIRKAP SFAKPLPEKK
201: GSMKFEQEQA IPTVPPNVRP TALFPREKKE SKKFDQDQAI PRVPPDVRPT ASFSREKKES KKFEQDKANQ MPSLASAPTS SYSSEAEAMA DTWEKEKMAK
301: IKKQYNMTMD TIVEWEAEKK AKAKRQMELK EGDNSERKRE KALEEYNDEI TRINKVAAAS RLTAEEKRRS AERKVREKAE RIRVTGKLPG ACGCF
001: MKLACKAIIS KTLKKPKPSN TSSQVLPPYF SLKMDTLIKQ TRRKHPASQE KIREVGSSTR EKKVSARKSV SFKEDKKKPS NWLQKQFSRQ MSGQSYDPIG
101: EMDHAAAVAA TAYAIATFEE TWLENYHSGL ELGPSSSRSK SRSEELLPLE EPRSLSRRFS GQLSFIDSET KDHKPPTLKS PMRKSSSVKK TFSMNLMGDH
201: TKQNQDSEEK HERQRKPVSE PPRIQPPLRT RSEPRAPPPP PPPLLSPSPL RLPPRETKRQ SSEHTSRKDD STADAWEKAE LSKIKARYEK LNRKIDLWEA
301: KKREKARRKL DISEQSELEQ RRKRGLQRFR EDTEYIEQIA AGARAQAEKD RQSKEFKVKE KAGVIRSTGK LPGNACCF
101: EMDHAAAVAA TAYAIATFEE TWLENYHSGL ELGPSSSRSK SRSEELLPLE EPRSLSRRFS GQLSFIDSET KDHKPPTLKS PMRKSSSVKK TFSMNLMGDH
201: TKQNQDSEEK HERQRKPVSE PPRIQPPLRT RSEPRAPPPP PPPLLSPSPL RLPPRETKRQ SSEHTSRKDD STADAWEKAE LSKIKARYEK LNRKIDLWEA
301: KKREKARRKL DISEQSELEQ RRKRGLQRFR EDTEYIEQIA AGARAQAEKD RQSKEFKVKE KAGVIRSTGK LPGNACCF
Arabidopsis Description
Remorin family protein [Source:TAIR;Acc:AT1G13920]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.