CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX96876	Canola	nucleus	88.01	88.01
CDX98136	Canola	nucleus	58.77	62.04
AT1G13920.4	Thale cress	nucleus	65.5	59.26
CDY36418	Canola	nucleus	55.56	58.82
CDX95945	Canola	cytosol, mitochondrion, nucleus	12.87	41.12
CDY44060	Canola	nucleus	11.99	38.32
KRH70859	Soybean	nucleus	27.49	35.34
KRH74999	Soybean	nucleus	27.49	35.34
KRH50535	Soybean	nucleus	33.04	34.04
Zm00001d015411_P001	Maize	nucleus	15.79	31.4
KRG89501	Soybean	nucleus	30.7	30.88
VIT_01s0011g00820.t01	Wine grape	nucleus	32.16	29.18
Solyc05g012550.2.1	Tomato	nucleus	29.53	26.23
CDY40911	Canola	endoplasmic reticulum, mitochondrion, plastid	15.79	25.96
OQU75583	Sorghum	cytosol	21.05	25.71
Solyc04g005470.2.1	Tomato	nucleus	23.39	25.4
KXG39897	Sorghum	cytosol	23.68	25.39
TraesCS1D01G058700.1	Wheat	nucleus	25.15	24.5
GSMUA_Achr2P19260_001	Banana	nucleus	21.93	24.43
TraesCS1A01G057900.1	Wheat	nucleus	24.56	23.93
Zm00001d028185_P002	Maize	cytosol	22.51	23.84
TraesCS1B01G075600.1	Wheat	nucleus	23.98	23.36
HORVU1Hr1G011610.2	Barley	cytosol	23.68	23.08
Os03t0211500-01	Rice	plasma membrane	20.76	22.76
TraesCS4D01G250800.1	Wheat	nucleus	20.76	22.68
TraesCS4A01G053800.2	Wheat	cytosol	20.47	22.44
TraesCS4B01G250900.1	Wheat	cytosol	20.47	22.36
Zm00001d048109_P002	Maize	mitochondrion	22.81	21.79
EER90227	Sorghum	nucleus	23.68	21.66
Zm00001d014455_P001	Maize	nucleus	21.64	21.33
Os10t0325400-01	Rice	cytosol, nucleus	24.27	21.01
HORVU4Hr1G068900.21	Barley	cytosol	16.96	18.35
CDY23073	Canola	nucleus	15.79	8.28
CDY02159	Canola	extracellular, golgi	14.04	6.59

Protein Annotations

EnsemblPlants:CDY34554	EnsemblPlantsGene:GSBRNA2T00056974001	InterPro:Remorin_C	ncoils:Coil	PANTHER:PTHR31471	PANTHER:PTHR31471:SF5
PFAM:PF03763	ProteinID:CDY34554	ProteinID:CDY34554.1	SEG:seg	UniParc:UPI0004EEB574	UniProt:A0A078HAT0
MapMan:35.2	:	:	:	:	:

Description

BnaC03g56540DBnaC03g56540D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HAT0]

Coordinates

chrLK032337:-:40907..42651

Molecular Weight (calculated)

39256.2 Da

IEP (calculated)

10.576

GRAVY (calculated)

-1.265

Length

342 amino acids

Sequence
(BLAST)

001: MDSLIKQTRR RHPAARVKTD EVGSPTREKK VSPRKSVSFE EDKKKPSNWL EKQFSRQMSD QSYDSISDMD YAAAVAATAY AVTTFEETWL ERYHSGREDA
101: FPIEEPRSLS RRFSGQLSFR EPELNDNKLP TPKSPVRKSS SVKKTPTFSM DLKGDHTRQS EDSGETHEKL KKPASVVSEP PAPMQIQTPV RTRSERRAPP
201: PPPPPPHLTP SPLRLPPRET KRPSSGGTTR EHDSTADAWE KAELAKIKAR YEKLNRKIDL WEAKKRDKAR RNLDKSEQSQ QEQRRKRGLQ RFREDMEYIE
301: HISSGARAQA EKQRQNEELK VKERAGIVRK TGKIPGKACS CF

Best Arabidopsis Sequence Match ( AT1G13920.4 )
(BLAST)

001: MKLACKAIIS KTLKKPKPSN TSSQVLPPYF SLKMDTLIKQ TRRKHPASQE KIREVGSSTR EKKVSARKSV SFKEDKKKPS NWLQKQFSRQ MSGQSYDPIG
101: EMDHAAAVAA TAYAIATFEE TWLENYHSGL ELGPSSSRSK SRSEELLPLE EPRSLSRRFS GQLSFIDSET KDHKPPTLKS PMRKSSSVKK TFSMNLMGDH
201: TKQNQDSEEK HERQRKPVSE PPRIQPPLRT RSEPRAPPPP PPPLLSPSPL RLPPRETKRQ SSEHTSRKDD STADAWEKAE LSKIKARYEK LNRKIDLWEA
301: KKREKARRKL DISEQSELEQ RRKRGLQRFR EDTEYIEQIA AGARAQAEKD RQSKEFKVKE KAGVIRSTGK LPGNACCF

Arabidopsis Description

Remorin family protein [Source:TAIR;Acc:AT1G13920]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.