Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- cytosol 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d012821_P003 | |
| Zm00001d014423_P002 | |
| Zm00001d030110_P001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G61270.1 | Zm00001d012821_P003 | AT1G32230.1 | 19548978 |
| AT5G61270.1 | Zm00001d014423_P002 | AT1G32230.1 | 19548978 |
| AT5G61270.1 | Zm00001d030110_P001 | AT1G32230.1 | 19548978 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d015411_P001 | Maize | nucleus | 50.46 | 94.77 |
| KXG39897 | Sorghum | cytosol | 86.69 | 87.77 |
| OQU75583 | Sorghum | cytosol | 75.85 | 87.5 |
| Zm00001d048109_P002 | Maize | mitochondrion | 80.5 | 72.63 |
| TraesCS4A01G053800.2 | Wheat | cytosol | 62.54 | 64.74 |
| TraesCS4B01G250900.1 | Wheat | cytosol | 62.54 | 64.54 |
| Os03t0211500-01 | Rice | plasma membrane | 60.99 | 63.14 |
| TraesCS4D01G250800.1 | Wheat | nucleus | 60.99 | 62.94 |
| HORVU4Hr1G068900.21 | Barley | cytosol | 54.49 | 55.7 |
| Zm00001d014455_P001 | Maize | nucleus | 41.49 | 38.62 |
| Bra004372.1-P | Field mustard | cytosol, mitochondrion, nucleus | 11.15 | 33.64 |
| CDX95945 | Canola | cytosol, mitochondrion, nucleus | 11.15 | 33.64 |
| AT1G69325.1 | Thale cress | nucleus | 12.07 | 32.5 |
| CDY44060 | Canola | nucleus | 10.53 | 31.78 |
| Bra038312.1-P | Field mustard | nucleus | 10.53 | 31.78 |
| KRH50535 | Soybean | nucleus | 29.1 | 28.31 |
| KRH70859 | Soybean | nucleus | 23.22 | 28.2 |
| GSMUA_Achr2P19260_001 | Banana | nucleus | 25.7 | 27.04 |
| KRH74999 | Soybean | nucleus | 21.98 | 26.69 |
| KRG89501 | Soybean | nucleus | 27.55 | 26.18 |
| CDY36418 | Canola | nucleus | 24.77 | 24.77 |
| Bra019698.1-P | Field mustard | nucleus | 24.77 | 24.69 |
| CDX98136 | Canola | nucleus | 24.15 | 24.07 |
| Solyc05g012550.2.1 | Tomato | nucleus | 27.55 | 23.12 |
| CDY40911 | Canola | endoplasmic reticulum, mitochondrion, plastid | 14.55 | 22.6 |
| CDY34554 | Canola | nucleus | 23.84 | 22.51 |
| KRH63271 | Soybean | cytosol | 11.15 | 22.09 |
| Bra016720.1-P | Field mustard | nucleus | 23.22 | 21.99 |
| CDX96876 | Canola | nucleus | 22.91 | 21.64 |
| VIT_01s0011g00820.t01 | Wine grape | nucleus | 24.46 | 20.95 |
| Solyc04g005470.2.1 | Tomato | nucleus | 20.43 | 20.95 |
| AT1G13920.4 | Thale cress | nucleus | 23.22 | 19.84 |
| Solyc06g069590.2.1 | Tomato | cytosol | 10.84 | 17.86 |
| VIT_17s0000g06920.t01 | Wine grape | nucleus | 11.76 | 16.74 |
| AT5G61280.1 | Thale cress | nucleus | 12.69 | 15.59 |
| KRH54632 | Soybean | nucleus | 11.76 | 14.62 |
| KRH03090 | Soybean | nucleus | 11.46 | 14.57 |
| KRH56866 | Soybean | nucleus | 10.53 | 12.83 |
| CDY23073 | Canola | nucleus | 15.79 | 7.82 |
| Bra012972.1-P | Field mustard | nucleus | 13.93 | 6.72 |
| CDY02159 | Canola | extracellular, golgi | 12.69 | 5.63 |
| AT5G61270.1 | Thale cress | nucleus | 2.17 | 1.91 |
Protein Annotations
| EnsemblPlants:Zm00001d028185_P002 | EnsemblPlants:Zm00001d028185_T002 | EnsemblPlantsGene:Zm00001d028185 | EntrezGene:100277367 | InterPro:Remorin_C | ncoils:Coil |
| PANTHER:PTHR31471 | PANTHER:PTHR31471:SF38 | PFAM:PF03763 | ProteinID:ONL94920.1 | SEG:seg | UniParc:UPI0004DEC489 |
| UniProt:A0A1D6JSP0 | MapMan:35.2 | : | : | : | : |
Description
remorin6.3 remorin6.3
Coordinates
chr1:-:25738664..25741208
Molecular Weight (calculated)
35379.7 Da
IEP (calculated)
10.389
GRAVY (calculated)
-0.999
Length
323 amino acids
Sequence
(BLAST)
(BLAST)
001: MDGDSKKLRV RFSGVGKGGR GGRQGSAIPP QESRPIGIAE MNSSGEYDAA FAATIAAAAF AIAAREDKLA AQKNSVPIEE VTPSLSPVNR AEGTKKPAGG
101: NKIARWFSGK EPIEHDDDDE GPVNVSVRRP LKPAPGKPED VPADHHKVAP RMLETSLGVR KGSGSSSRSA ERKWSKEFEQ EQAVQKAPSA VRPATSYRSG
201: RNGEGAAGVA ATGGTGSKAD EWEKAKLGRV REEYEKMMET IAEWETEKKV KARRQKEQKE TELDRKREKA LEEYNLEMTR ISKISGGARA MAEERKYNDR
301: KKIREKARKM RSTGKPPRTC ACF
101: NKIARWFSGK EPIEHDDDDE GPVNVSVRRP LKPAPGKPED VPADHHKVAP RMLETSLGVR KGSGSSSRSA ERKWSKEFEQ EQAVQKAPSA VRPATSYRSG
201: RNGEGAAGVA ATGGTGSKAD EWEKAKLGRV REEYEKMMET IAEWETEKKV KARRQKEQKE TELDRKREKA LEEYNLEMTR ISKISGGARA MAEERKYNDR
301: KKIREKARKM RSTGKPPRTC ACF
001: MKLACKAIIS KTLKKPKPSN TSSQVLPPYF SLKMDTLIKQ TRRKHPASQE KIREVGSSTR EKKVSARKSV SFKEDKKKPS NWLQKQFSRQ MSGQSYDPIG
101: EMDHAAAVAA TAYAIATFEE TWLENYHSGL ELGPSSSRSK SRSEELLPLE EPRSLSRRFS GQLSFIDSET KDHKPPTLKS PMRKSSSVKK TFSMNLMGDH
201: TKQNQDSEEK HERQRKPVSE PPRIQPPLRT RSEPRAPPPP PPPLLSPSPL RLPPRETKRQ SSEHTSRKDD STADAWEKAE LSKIKARYEK LNRKIDLWEA
301: KKREKARRKL DISEQSELEQ RRKRGLQRFR EDTEYIEQIA AGARAQAEKD RQSKEFKVKE KAGVIRSTGK LPGNACCF
101: EMDHAAAVAA TAYAIATFEE TWLENYHSGL ELGPSSSRSK SRSEELLPLE EPRSLSRRFS GQLSFIDSET KDHKPPTLKS PMRKSSSVKK TFSMNLMGDH
201: TKQNQDSEEK HERQRKPVSE PPRIQPPLRT RSEPRAPPPP PPPLLSPSPL RLPPRETKRQ SSEHTSRKDD STADAWEKAE LSKIKARYEK LNRKIDLWEA
301: KKREKARRKL DISEQSELEQ RRKRGLQRFR EDTEYIEQIA AGARAQAEKD RQSKEFKVKE KAGVIRSTGK LPGNACCF
Arabidopsis Description
Remorin family protein [Source:TAIR;Acc:AT1G13920]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.