Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU0Hr1G014460.1 | |
| HORVU1Hr1G050960.7 | |
| HORVU5Hr1G124010.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G61270.1 | HORVU0Hr1G014460.1 | AT1G32230.1 | 19548978 |
| AT5G61270.1 | HORVU1Hr1G050960.7 | AT1G32230.1 | 19548978 |
| AT5G61270.1 | HORVU5Hr1G124010.1 | AT1G32230.1 | 19548978 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4A01G053800.2 | Wheat | cytosol | 81.01 | 82.05 |
| TraesCS4B01G250900.1 | Wheat | cytosol | 80.7 | 81.47 |
| TraesCS4D01G250800.1 | Wheat | nucleus | 80.38 | 81.15 |
| Zm00001d015411_P001 | Maize | nucleus | 34.81 | 63.95 |
| OQU75583 | Sorghum | cytosol | 55.38 | 62.5 |
| KXG39897 | Sorghum | cytosol | 58.54 | 57.99 |
| Os03t0211500-01 | Rice | plasma membrane | 56.01 | 56.73 |
| Zm00001d028185_P002 | Maize | cytosol | 55.7 | 54.49 |
| Zm00001d048109_P002 | Maize | mitochondrion | 53.8 | 47.49 |
| HORVU1Hr1G011610.2 | Barley | cytosol | 41.46 | 37.32 |
| Bra004372.1-P | Field mustard | cytosol, mitochondrion, nucleus | 8.86 | 26.17 |
| CDX95945 | Canola | cytosol, mitochondrion, nucleus | 8.86 | 26.17 |
| GSMUA_Achr2P19260_001 | Banana | nucleus | 24.68 | 25.41 |
| AT1G69325.1 | Thale cress | nucleus | 9.49 | 25.0 |
| KRG89501 | Soybean | nucleus | 26.27 | 24.41 |
| CDY44060 | Canola | nucleus | 8.23 | 24.3 |
| Bra038312.1-P | Field mustard | nucleus | 8.23 | 24.3 |
| KRH50535 | Soybean | nucleus | 24.37 | 23.19 |
| KRH70859 | Soybean | nucleus | 18.35 | 21.8 |
| KRH63271 | Soybean | cytosol | 10.76 | 20.86 |
| KRH74999 | Soybean | nucleus | 17.41 | 20.68 |
| Solyc05g012550.2.1 | Tomato | nucleus | 24.68 | 20.26 |
| CDY40911 | Canola | endoplasmic reticulum, mitochondrion, plastid | 12.97 | 19.71 |
| Bra019698.1-P | Field mustard | nucleus | 19.94 | 19.44 |
| CDY36418 | Canola | nucleus | 19.3 | 18.89 |
| CDX98136 | Canola | nucleus | 19.3 | 18.83 |
| Solyc04g005470.2.1 | Tomato | nucleus | 18.35 | 18.41 |
| VIT_01s0011g00820.t01 | Wine grape | nucleus | 21.84 | 18.3 |
| Bra016720.1-P | Field mustard | nucleus | 18.67 | 17.3 |
| CDX96876 | Canola | nucleus | 18.67 | 17.25 |
| CDY34554 | Canola | nucleus | 18.35 | 16.96 |
| AT1G13920.4 | Thale cress | nucleus | 19.3 | 16.14 |
| Solyc06g069590.2.1 | Tomato | cytosol | 9.18 | 14.8 |
| KRH54632 | Soybean | nucleus | 11.71 | 14.23 |
| VIT_17s0000g06920.t01 | Wine grape | nucleus | 9.81 | 13.66 |
| AT5G61280.1 | Thale cress | nucleus | 11.08 | 13.31 |
| KRH03090 | Soybean | nucleus | 9.49 | 11.81 |
| KRH56866 | Soybean | nucleus | 7.91 | 9.43 |
| CDY23073 | Canola | nucleus | 13.29 | 6.44 |
| Bra012972.1-P | Field mustard | nucleus | 12.03 | 5.67 |
| CDY02159 | Canola | extracellular, golgi | 11.39 | 4.95 |
| AT5G61270.1 | Thale cress | nucleus | 2.22 | 1.91 |
Protein Annotations
| EnsemblPlants:HORVU4Hr1G068900.21 | EnsemblPlantsGene:HORVU4Hr1G068900 | InterPro:Remorin_C | ncoils:Coil | PANTHER:PTHR31471 | PANTHER:PTHR31471:SF38 |
| PFAM:PF03763 | SEG:seg | UniParc:UPI000B476C6F | UniProt:A0A287PI21 | MapMan:35.2 | : |
Description
No Description!
Coordinates
chrchr4H:-:567868578..567870658
Molecular Weight (calculated)
35105.6 Da
IEP (calculated)
10.500
GRAVY (calculated)
-1.004
Length
316 amino acids
Sequence
(BLAST)
(BLAST)
001: PLELFLLYKY VARHGRRLEG AERVQFSGVD KRDKGSRKDS IILPQENPAL GRAQMDSSDE YNAIFAATIA AATYAIAAQE EKQKASPVQP PTKRDESVRK
101: PTGGSKISRW FSAKESAQDA DEGPANVSVR RPLKPEQRKP GGTGSDQKVP LPLPPKMHDS SVGAKKAPGS SRKSPEKKGS KRFEQEQAVQ RVPTAVRPAT
201: SYQSRRNDDG AAGVTAIAGT QTKADVWEKE KLARVREEYE KMMETIAEWE TEKKVALDRK RAKQLAEYNQ EMTRINKIAG GARSMAGERK YEDEKKIREK
301: AKKIRSTGKS ARGCCF
101: PTGGSKISRW FSAKESAQDA DEGPANVSVR RPLKPEQRKP GGTGSDQKVP LPLPPKMHDS SVGAKKAPGS SRKSPEKKGS KRFEQEQAVQ RVPTAVRPAT
201: SYQSRRNDDG AAGVTAIAGT QTKADVWEKE KLARVREEYE KMMETIAEWE TEKKVALDRK RAKQLAEYNQ EMTRINKIAG GARSMAGERK YEDEKKIREK
301: AKKIRSTGKS ARGCCF
001: MLSELDITDY PALNWLKNQS YWYEKNDYYN EKESELAVSV AVAAFVIRSM EEADKQKSKR IREEIKRSRT KKSNLVIPNT QVKRLSKSYT QEVKIGEESF
101: RKKLLEYPSE NRRPQEIGSS SGTSGLASAS SKADSWEKSQ IKKIRLRYEK MKADIVGWEN ERKLAATLLM EKRKSELEKR KGINNQHYKS KLARIQLIAD
201: GAKKQLEEKR RSKEAQVHGK VKKMSRTGKV PNNYFCFRCY
101: RKKLLEYPSE NRRPQEIGSS SGTSGLASAS SKADSWEKSQ IKKIRLRYEK MKADIVGWEN ERKLAATLLM EKRKSELEKR KGINNQHYKS KLARIQLIAD
201: GAKKQLEEKR RSKEAQVHGK VKKMSRTGKV PNNYFCFRCY
Arabidopsis Description
Gb [Source:UniProtKB/TrEMBL;Acc:Q9FLK5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.