Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- plasma membrane 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT1G69325.1 | Thale cress | nucleus | 13.77 | 44.17 |
| Solyc04g005470.2.1 | Tomato | nucleus | 34.29 | 41.9 |
| CDY44060 | Canola | nucleus | 11.17 | 40.19 |
| Bra038312.1-P | Field mustard | nucleus | 11.17 | 40.19 |
| Bra004372.1-P | Field mustard | cytosol, mitochondrion, nucleus | 10.91 | 39.25 |
| KRH70859 | Soybean | nucleus | 26.49 | 38.35 |
| CDX95945 | Canola | cytosol, mitochondrion, nucleus | 10.65 | 38.32 |
| KRH50535 | Soybean | nucleus | 31.69 | 36.75 |
| KRH74999 | Soybean | nucleus | 24.16 | 34.96 |
| KRG89501 | Soybean | nucleus | 29.61 | 33.53 |
| Zm00001d015411_P001 | Maize | nucleus | 14.03 | 31.4 |
| VIT_01s0011g00820.t01 | Wine grape | nucleus | 30.65 | 31.3 |
| Bra016720.1-P | Field mustard | nucleus | 27.53 | 31.09 |
| OQU75583 | Sorghum | cytosol | 22.34 | 30.71 |
| CDX96876 | Canola | nucleus | 27.01 | 30.41 |
| KXG39897 | Sorghum | cytosol | 25.19 | 30.41 |
| CDY34554 | Canola | nucleus | 26.23 | 29.53 |
| CDX98136 | Canola | nucleus | 24.68 | 29.32 |
| Bra019698.1-P | Field mustard | nucleus | 24.16 | 28.7 |
| TraesCS4A01G053800.2 | Wheat | cytosol | 23.12 | 28.53 |
| GSMUA_Achr2P19260_001 | Banana | nucleus | 22.34 | 28.01 |
| CDY36418 | Canola | nucleus | 23.38 | 27.86 |
| TraesCS4B01G250900.1 | Wheat | cytosol | 22.6 | 27.8 |
| Zm00001d028185_P002 | Maize | cytosol | 23.12 | 27.55 |
| TraesCS4D01G250800.1 | Wheat | nucleus | 22.08 | 27.16 |
| TraesCS1A01G057900.1 | Wheat | nucleus | 24.68 | 27.07 |
| TraesCS1D01G058700.1 | Wheat | nucleus | 24.42 | 26.78 |
| CDY40911 | Canola | endoplasmic reticulum, mitochondrion, plastid | 14.29 | 26.44 |
| Zm00001d048109_P002 | Maize | mitochondrion | 24.42 | 26.26 |
| Os03t0211500-01 | Rice | plasma membrane | 21.04 | 25.96 |
| TraesCS1B01G075600.1 | Wheat | nucleus | 23.64 | 25.93 |
| HORVU1Hr1G011610.2 | Barley | cytosol | 23.12 | 25.36 |
| Os10t0325400-01 | Rice | cytosol, nucleus | 25.71 | 25.06 |
| HORVU4Hr1G068900.21 | Barley | cytosol | 20.26 | 24.68 |
| AT1G13920.4 | Thale cress | nucleus | 24.16 | 24.6 |
| EER90227 | Sorghum | nucleus | 23.38 | 24.06 |
| Zm00001d014455_P001 | Maize | nucleus | 20.52 | 22.77 |
| Solyc06g069590.2.1 | Tomato | cytosol | 9.35 | 18.37 |
Protein Annotations
| EnsemblPlants:Solyc05g012550.2.1 | EnsemblPlantsGene:Solyc05g012550.2 | InterPro:Remorin_C | ncoils:Coil | PANTHER:PTHR31471 | PANTHER:PTHR31471:SF5 |
| PFAM:PF03763 | SEG:seg | UniParc:UPI00027658B2 | UniProt:K4BXX7 | MapMan:35.2 | : |
Description
No Description!
Coordinates
chr5:+:5785174..5787462
Molecular Weight (calculated)
42980.3 Da
IEP (calculated)
10.485
GRAVY (calculated)
-0.994
Length
385 amino acids
Sequence
(BLAST)
(BLAST)
001: MDMLKQIRVK FTGIGEEERG GSSRDRTIPP QKTQLFKETK RIPSWLHRQF PRTMSRDYDS SDSIDYPAAV AAAAFAITSI EEKSEYDHRR TNSGGDKPLT
101: KIKSKGEDIA KKPEKLSDEA SKSSSKIPYK SEPIGSTTIN PEPVKSVPSI KKKPTFGDTK PESEVVGKLK KVPSIKRMPA FGESTPESEV AEKAKKAPSI
201: KKTPTFGDSK PESEVAEKAK RAPSMKRAST FPDQSIDIRP PKAPEVPVSA PAVQPTRQLS SQPGMAKAPN TIKPASGNSQ ADIWEKEEME KIRIRYKKLI
301: NEIVDWETKK KKKAKRNLEK VEAELDRRRA KARKHFNDEV GRIESIAGGA KEQADQHRKN EELKVLEKAN KIRVTGKMPS TCSCF
101: KIKSKGEDIA KKPEKLSDEA SKSSSKIPYK SEPIGSTTIN PEPVKSVPSI KKKPTFGDTK PESEVVGKLK KVPSIKRMPA FGESTPESEV AEKAKKAPSI
201: KKTPTFGDSK PESEVAEKAK RAPSMKRAST FPDQSIDIRP PKAPEVPVSA PAVQPTRQLS SQPGMAKAPN TIKPASGNSQ ADIWEKEEME KIRIRYKKLI
301: NEIVDWETKK KKKAKRNLEK VEAELDRRRA KARKHFNDEV GRIESIAGGA KEQADQHRKN EELKVLEKAN KIRVTGKMPS TCSCF
001: MLSELDITDY PALNWLKNQS YWYEKNDYYN EKESELAVSV AVAAFVIRSM EEADKQKSKR IREEIKRSRT KKSNLVIPNT QVKRLSKSYT QEVKIGEESF
101: RKKLLEYPSE NRRPQEIGSS SGTSGLASAS SKADSWEKSQ IKKIRLRYEK MKADIVGWEN ERKLAATLLM EKRKSELEKR KGINNQHYKS KLARIQLIAD
201: GAKKQLEEKR RSKEAQVHGK VKKMSRTGKV PNNYFCFRCY
101: RKKLLEYPSE NRRPQEIGSS SGTSGLASAS SKADSWEKSQ IKKIRLRYEK MKADIVGWEN ERKLAATLLM EKRKSELEKR KGINNQHYKS KLARIQLIAD
201: GAKKQLEEKR RSKEAQVHGK VKKMSRTGKV PNNYFCFRCY
Arabidopsis Description
Gb [Source:UniProtKB/TrEMBL;Acc:Q9FLK5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.