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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • plastid 1
  • cytosol 2
  • plasma membrane 1
  • mitochondrion 1
  • nucleus 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, nucleus, plasma membrane, plastid
BaCelLo:plastid
MultiLoc:cytosol
Plant-mPloc:plasma membrane
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
Solyc08g005270.2.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G61270.1 Solyc08g005270.2.1 AT1G32230.1 19548978
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
VIT_17s0000g06920.t01 Wine grape nucleus 46.43 40.09
KRH54632 Soybean nucleus 35.2 26.54
AT5G61280.1 Thale cress nucleus 34.69 25.86
KRH63271 Soybean cytosol 20.41 24.54
KRH03090 Soybean nucleus 28.57 22.05
KRH56866 Soybean nucleus 28.57 21.13
GSMUA_Achr2P19260_001 Banana nucleus 21.43 13.68
OQU75583 Sorghum cytosol 19.39 13.57
KXG39897 Sorghum cytosol 19.39 11.91
TraesCS1D01G058700.1 Wheat nucleus 20.92 11.68
TraesCS1A01G057900.1 Wheat nucleus 20.92 11.68
Zm00001d015411_P001 Maize nucleus 10.2 11.63
TraesCS1B01G075600.1 Wheat nucleus 20.41 11.4
HORVU1Hr1G011610.2 Barley cytosol 19.9 11.11
Os03t0211500-01 Rice plasma membrane 17.35 10.9
TraesCS4A01G053800.2 Wheat cytosol 17.35 10.9
Zm00001d048109_P002 Maize mitochondrion 19.9 10.89
Os10t0325400-01 Rice cytosol, nucleus 21.94 10.89
TraesCS4B01G250900.1 Wheat cytosol 17.35 10.86
TraesCS4D01G250800.1 Wheat nucleus 17.35 10.86
Zm00001d028185_P002 Maize cytosol 17.86 10.84
EER90227 Sorghum nucleus 20.41 10.7
Zm00001d014455_P001 Maize nucleus 18.88 10.66
CDY23073 Canola nucleus 34.69 10.43
Bra012972.1-P Field mustard nucleus 34.69 10.15
Solyc05g012550.2.1 Tomato nucleus 18.37 9.35
HORVU4Hr1G068900.21 Barley cytosol 14.8 9.18
Solyc04g005470.2.1 Tomato nucleus 14.29 8.89
CDY02159 Canola extracellular, golgi 31.12 8.38
AT5G61270.1 Thale cress nucleus 0.0 0.0
Protein Annotations
EnsemblPlants:Solyc06g069590.2.1EnsemblPlantsGene:Solyc06g069590.2InterPro:Remorin_Cncoils:CoilPANTHER:PTHR31471PANTHER:PTHR31471:SF8
PFAM:PF03763SEG:segUniParc:UPI0002766B57UniProt:K4C8D2MapMan:35.2:
Description
No Description!
Coordinates
chr6:+:43342103..43343199
Molecular Weight (calculated)
22372.9 Da
IEP (calculated)
10.819
GRAVY (calculated)
-0.941
Length
196 amino acids
Sequence
(BLAST)
001: MKRNIYDLGD GEFAAAIAAT AFAIRSLEEN AGSQNQTKAK RPVIRPPEAA PMRRTSTMNR KTSAEIVSIT PVANDKMQKG ISRGSRNAEN KADAWEKAQI
101: AKIRKRHDEL LSALLAWENE KKMMAKEQME RRKNQVELAL KRNLQHYKNK LARIDHIAKG ARTQAEEKRR YEETTVKEKS NKIRSTRTGP VTCYCF
Best Arabidopsis Sequence Match ( AT5G61280.2 )
(BLAST)
001: MLSELDITDY PALNWLKNQS YWYEKNDYYN EKESELAVSV AVAAFVIRSM EEADKQKSKR IREEIKRSRT KKSNLVIPNT QVKRLSKSYT QEVKIGEESF
101: RKKLLEYPSE NRRPQEIGSS SGTSGLASAS SKADSWEKSQ IKKIRLRYEK MKADIVGWEN ERKLAATLLM EKRKSELEKR KGINNQHYKS KLARIQLIAD
201: GAKKQLEEKR RSKEAQVHGK VKKMSRTGKV PNNYFCFRCY
Arabidopsis Description
Gb [Source:UniProtKB/TrEMBL;Acc:Q9FLK5]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.