Factsheet for Solyc08g005270.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	mitochondrion
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g005020.2.1
Solyc01g111580.2.1
Solyc03g113720.2.1
Solyc03g118230.1.1
Solyc04g018090.2.1
Solyc04g018100.2.1
Solyc05g020020.2.1
Solyc06g069590.2.1
Solyc06g073180.2.1
Solyc07g045180.2.1
Solyc07g064040.2.1
Solyc09g009010.2.1
Solyc09g010840.1.1
Solyc10g006510.2.1
Solyc10g018510.1.1
Solyc10g055550.1.1
Solyc10g083670.1.1
Solyc12g006240.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G32230.1	Solyc06g073180.2.1	AT1G06040.1	11018516
AT1G32230.1	Solyc06g073180.2.1	AT1G06040.1	19548978
AT1G32230.1	Solyc03g113720.2.1	AT1G74890.1	19548978
AT1G32230.1	Solyc01g005020.2.1	AT2G01980.1	17023541
AT1G32230.1	Solyc04g018090.2.1	AT2G01980.1	17023541
AT1G32230.1	Solyc04g018100.2.1	AT2G01980.1	17023541
AT1G32230.1	Solyc01g111580.2.1	AT2G16770.1	19548978
AT1G32230.1	Solyc10g055550.1.1	AT2G16770.1	19548978
AT1G32230.1	Solyc03g118230.1.1	AT2G33550.1	19548978
AT1G32230.1	Solyc09g010840.1.1	AT2G37630.1	19548978
AT1G32230.1	Solyc10g018510.1.1	AT4G00050.1	19548978
AT1G32230.1	Solyc09g009010.2.1	AT5G03760.1	19548978
AT1G32230.1	Solyc10g083670.1.1	AT5G03760.1	19548978
AT1G32230.1	Solyc05g020020.2.1	AT5G48250.1	19548978
AT1G32230.1	Solyc07g045180.2.1	AT5G48250.1	19548978
AT1G32230.1	Solyc12g006240.1.1	AT5G48250.1	19548978
AT1G32230.1	Solyc07g064040.2.1	AT5G54680.1	19548978
AT1G32230.1	Solyc10g006510.2.1	AT5G54680.1	19548978
AT1G32230.1	Solyc06g069590.2.1	AT5G61270.1	19548978

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_02s0012g01920.t01	Wine grape	cytosol	38.67	43.53
VIT_02s0012g01930.t01	Wine grape	nucleus	44.83	43.18
CDY60257	Canola	cytosol	22.5	41.28
KRH74370	Soybean	mitochondrion, nucleus, plastid	39.83	40.99
KRH39574	Soybean	mitochondrion, nucleus, plastid	39.17	40.31
Bra023252.1-P	Field mustard	nucleus	32.0	39.83
CDY22597	Canola	nucleus	35.33	38.97
CDY67026	Canola	nucleus	35.67	38.91
Bra017317.1-P	Field mustard	nucleus	33.67	38.11
AT1G32230.1	Thale cress	nucleus	37.0	37.69
Bra035511.1-P	Field mustard	cytosol	35.0	37.63
CDY32124	Canola	nucleus	33.0	37.36
Bra005336.1-P	Field mustard	cytosol, nucleus, plastid	32.17	36.83
CDX84199	Canola	cytosol, nucleus, plastid	30.17	36.71
Solyc08g076420.2.1	Tomato	nucleus	36.5	36.68
GSMUA_Achr11P...	Banana	nucleus	31.0	35.77
CDY31694	Canola	nucleus	31.0	35.23
Solyc06g066330.2.1	Tomato	nucleus	34.83	35.19
CDY43007	Canola	nucleus	34.0	35.11
CDY41739	Canola	cytosol	32.0	34.91
AT2G35510.3	Thale cress	cytosol	32.67	34.51
GSMUA_Achr4P19000_001	Banana	nucleus	24.0	34.37
GSMUA_Achr8P14660_001	Banana	cytosol, endoplasmic reticulum, nucleus	31.5	34.36
TraesCS4A01G321300.1	Wheat	nucleus	32.0	33.74
GSMUA_Achr5P14120_001	Banana	nucleus	31.67	33.57
TraesCS5D01G551800.3	Wheat	nucleus	32.33	33.56
TraesCS5B01G557500.2	Wheat	nucleus	32.33	33.56
GSMUA_Achr2P18060_001	Banana	nucleus	31.67	33.04
Solyc05g005280.2.1	Tomato	cytosol	16.67	32.89
HORVU5Hr1G124010.1	Barley	nucleus	31.33	32.47
Os10t0577800-01	Rice	nucleus	31.83	32.32
TraesCS1A01G195400.4	Wheat	cytosol	31.67	32.09
TraesCS1B01G210300.4	Wheat	peroxisome	31.5	32.09
TraesCS1D01G199200.1	Wheat	cytosol, nucleus, plastid	31.5	31.93
KRH74373	Soybean	mitochondrion	25.33	31.87
KXG38822	Sorghum	nucleus	31.0	31.26
HORVU1Hr1G050960.7	Barley	nucleus	31.67	31.2
EER90487	Sorghum	nucleus	29.33	30.72
Zm00001d014423_P002	Maize	nucleus	31.33	30.67
Zm00001d030110_P001	Maize	mitochondrion, nucleus	30.33	30.54
Os03t0854800-03	Rice	nucleus	29.67	30.48
Solyc05g005290.2.1	Tomato	cytosol	10.83	27.9
Solyc03g114360.2.1	Tomato	nucleus	16.5	26.4
Zm00001d012821_P003	Maize	extracellular, vacuole	28.83	26.37
HORVU0Hr1G014460.1	Barley	nucleus	25.0	26.0
Solyc04g077070.1.1	Tomato	cytosol, extracellular, nucleus, plastid	9.17	25.46
Solyc04g077080.1.1	Tomato	cytosol	15.5	25.34
Solyc01g057370.1.1	Tomato	nucleus	13.0	24.76
Solyc01g057360.1.1	Tomato	cytosol	12.67	24.68
Solyc04g077090.1.1	Tomato	cytosol	18.17	24.61
Solyc04g077100.2.1	Tomato	plastid	15.17	20.97

Protein Annotations

EnsemblPlants:Solyc08g005270.2.1	EnsemblPlantsGene:Solyc08g005270.2	Gene3D:3.90.228.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0003950
GO:GO:0016740	InterPro:IPR012317	InterPro:Poly(ADP-ribose)pol_cat_dom	InterPro:RST	PANTHER:PTHR32263	PANTHER:PTHR32263:SF4
PFAM:PF12174	PFscan:PS51059	SEG:seg	SUPFAM:SSF56399	UniParc:UPI000276B851	UniProt:K4CI18
MapMan:35.1	:	:	:	:	:

Description

No Description!

Coordinates

chr8:-:192513..198421

Molecular Weight (calculated)

67862.7 Da

IEP (calculated)

6.811

GRAVY (calculated)

-0.453

Length

600 amino acids

Sequence
(BLAST)

001: METKFEKVLD RSRNIVVDLK RKREARCETH LSGATHVILP VRPLLNSSIR PLGKRTKLNG SRSRCGGYKF HQKESLLRYY LNFRRSGLPQ RLMYYQNSQW
101: TDFPENIVSM AKQDLRTKRS AREVVFNGNN YVLDFFHMML LDLKSGMQQP IAWIDEAGKC FFPEVFAYCD ELHEPCHCED NDCVDVDSET EGSNDLELRL
201: EIEVNGADIS SSEESSGESN ANFEQVNFCH EPAAKNRIAE VGDDHVRISD TKAKDDSVEN YQMVENAVGR YDSKWKHMDP KAVSEMFLKG ISSSASANII
301: DLQRISSSFM EVRKELFQKQ VEILRKHRGD ATVSYAWLPS SKGMITSIMK YGLANYYPSR TNSSYGIGVH LFPANCSEIS AKCSDVDENG VQYMVLCRVI
401: MGNMEVVCPG SKQFHPSSED FDNGVDSVEN PKCYVVWTMN TSTHIFPEYV VSFKFSSDSE GYLVGNRSPN VSAVTSCQGP ADKVPADTLP AVLGSDCYQN
501: SLGLASKKAS RTPKSPWMPF PMLFAAISRK VRQEDMNLVC SNYELFKGKK INRDEFVRKL RLIVGDTLLR STITSLQCQV PPKSMEMVSV KQEQESICLE

Best Arabidopsis Sequence Match ( AT1G32230.1 )
(BLAST)

001: MEAKIVKVLD SSRCEDGFGK KRKRAASYAA YVTGVSCAKL QNVPPPNGQC QIPDKRRRLE GENKLSAYEN RSGKALVRYY TYFKKTGIAK RVMMYENGEW
101: NDLPEHVICA IQNELEEKSA AIEFKLCGHS FILDFLHMQR LDMETGAKTP LAWIDNAGKC FFPEIYESDE RTNYCHHKCV EDPKQNAPHD IKLRLEIDVN
201: GGETPRLNLE ECSDESGDNM MDDVPLAQRS SNEHYDEATE DSCSRKLEAA VSKWDETDAI VVSGAKLTGS EVLDKDAVKK MFAVGTASLG HVPVLDVGRF
301: SSEIAEARLA LFQKQVEITK KHRGDANVRY AWLPAKREVL SAVMMQGLGV GGAFIRKSIY GVGIHLTAAD CPYFSARYCD VDENGVRYMV LCRVIMGNME
401: LLRGDKAQFF SGGEEYDNGV DDIESPKNYI VWNINMNTHI FPEFVVRFKL SNLPNAEGNL IAKRDNSGVT LEGPKDLPPQ LESNQGARGS GSANSVGSST
501: TRPKSPWMPF PTLFAAISHK VAENDMLLIN ADYQQLRDKK MTRAEFVRKL RVIVGDDLLR STITTLQNQP KSKEIPGSIR DHEEGAGGL

Arabidopsis Description

RCD1Poly [ADP-ribose] polymerase [Source:UniProtKB/TrEMBL;Acc:M5BF30]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.