Factsheet for Solyc04g077070.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, extracellular, nucleus, cytosol

Predictor Summary:

nucleus 3
cytosol 1
plastid 2
extracellular 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g057360.1.1	Tomato	cytosol	86.11	60.39
PGSC0003DMT400093081	Potato	nucleus	46.3	52.91
Solyc01g057370.1.1	Tomato	nucleus	38.43	26.35
Solyc04g077080.1.1	Tomato	cytosol	42.13	24.8
Solyc04g077100.2.1	Tomato	plastid	46.76	23.27
Solyc04g077090.1.1	Tomato	cytosol	43.52	21.22
Solyc05g005290.2.1	Tomato	cytosol	19.91	18.45
GSMUA_Achr7P27570_001	Banana	cytosol, nucleus, plastid	28.7	16.23
VIT_18s0001g08290.t01	Wine grape	plastid	35.19	15.67
GSMUA_Achr5P08960_001	Banana	mitochondrion, nucleus	32.41	14.68
TraesCS4B01G235000.1	Wheat	nucleus	29.63	14.58
Solyc05g005280.2.1	Tomato	cytosol	20.37	14.47
TraesCS4A01G059400.1	Wheat	nucleus	29.17	14.35
TraesCS4D01G236400.2	Wheat	nucleus	29.17	14.35
Solyc03g114360.2.1	Tomato	nucleus	23.15	13.33
Os03t0230300-01	Rice	nucleus	28.24	13.17
Zm00001d028307_P001	Maize	nucleus	25.93	12.99
HORVU4Hr1G065800.1	Barley	nucleus, plastid	31.02	12.96
Zm00001d047993_P001	Maize	cytosol, nucleus, plastid	26.85	12.95
EER92605	Sorghum	nucleus	26.39	12.69
Solyc08g005270.2.1	Tomato	nucleus	25.46	9.17
Solyc08g076420.2.1	Tomato	nucleus	25.0	9.05
Solyc06g066330.2.1	Tomato	nucleus	21.76	7.91

Protein Annotations

EnsemblPlants:Solyc04g077070.1.1	EnsemblPlantsGene:Solyc04g077070.1	Gene3D:3.90.228.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0003950
GO:GO:0016740	InterPro:IPR012317	InterPro:Poly(ADP-ribose)pol_cat_dom	PANTHER:PTHR32263	PANTHER:PTHR32263:SF5	PFscan:PS51059
SEG:seg	SUPFAM:SSF56399	UniParc:UPI0002766252	UniProt:K4BUE4	MapMan:35.1	:

Description

No Description!

Coordinates

chr4:+:62029256..62029991

Molecular Weight (calculated)

24003.7 Da

IEP (calculated)

6.935

GRAVY (calculated)

-0.304

Length

216 amino acids

Sequence
(BLAST)

001: MIGSSNNVDE SQNLSLDSSN ESGSSSRIVM ATPNELVPPK WAGTKLLSEE GRIYQKIKDG LPPIMKNRVT ITAIHLCMRR VPVEESRFEV YLENVKKVTR
101: ARGRRVDSSG WYGTSAKNVD SLMRRGFEMN SIMPASYPHG VGIYLSHFLS PQISDMMSDI DENGEKHIVL CQFILGNSEK VELGSKQLFP SSANFDTGVD
201: ELTNPKVYVV WCGVAI

Best Arabidopsis Sequence Match ( AT1G70440.1 )
(BLAST)

001: MAAQVEIEDQ ESVTNLDNGE IINPISDNAP NFSGDATILL REATFEHNLI KNCFLSGMGS FATETTIVTV RKILTQRLIT TKAKFAVFKL FTEAMKRKNN
101: GYANIRYGWY SGSKEEIDRV ITYGFSNREI KKVENDVGSH GVGIHLVHHR YSLAAALVGE GDEEGIKNIL LCRVILGKPE QIVTGSKQSY PSSNQFDSGV
201: DNLENPRKYV IWSCNMNSYI LPTYIVSFKS HLLRGLIGRA RSPCVSFSVL MSILSKSLDA ARMNLILTSY DDFRKRKLRR EQLVRKIREV VGDNLLFKIL
301: KNQRR

Arabidopsis Description

SRO3Probable inactive poly [ADP-ribose] polymerase SRO3 [Source:UniProtKB/Swiss-Prot;Acc:O64592]
SUBAcon: [cytoskeleton,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.