Factsheet for VIT_18s0001g08290.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g077070.1.1	Tomato	cytosol, extracellular, nucleus, plastid	15.67	35.19
Solyc01g057370.1.1	Tomato	nucleus	22.47	34.6
GSMUA_Achr7P27570_001	Banana	cytosol, nucleus, plastid	27.01	34.29
PGSC0003DMT400093081	Potato	nucleus	13.2	33.86
Solyc04g077080.1.1	Tomato	cytosol	24.95	32.97
Solyc04g077090.1.1	Tomato	cytosol	29.07	31.83
Solyc01g057360.1.1	Tomato	cytosol	19.38	30.52
PGSC0003DMT400012724	Potato	cytosol, nucleus, plastid	31.96	30.39
PGSC0003DMT400012725	Potato	cytosol	25.98	30.22
Solyc04g077100.2.1	Tomato	plastid	26.6	29.72
GSMUA_Achr5P08960_001	Banana	mitochondrion, nucleus	29.07	29.56
Zm00001d047993_P001	Maize	cytosol, nucleus, plastid	26.8	29.02
EER92605	Sorghum	nucleus	26.39	28.51
Zm00001d028307_P001	Maize	nucleus	25.15	28.31
TraesCS4A01G059400.1	Wheat	nucleus	25.57	28.25
TraesCS4B01G235000.1	Wheat	nucleus	25.36	28.02
TraesCS4D01G236400.2	Wheat	nucleus	24.95	27.56
Os03t0230300-01	Rice	nucleus	25.36	26.57
VIT_01s0127g00680.t01	Wine grape	nucleus	16.49	24.62
HORVU4Hr1G065800.1	Barley	nucleus, plastid	23.51	22.05
VIT_17s0000g08370.t01	Wine grape	nucleus	15.05	21.22
VIT_02s0012g01920.t01	Wine grape	cytosol	23.09	21.01
VIT_02s0012g01930.t01	Wine grape	nucleus	24.74	19.26

Protein Annotations

EntrezGene:100245401	wikigene:100245401	Gene3D:3.90.228.10	MapMan:35.1	ProteinID:CCB45704	ProteinID:CCB45704.1
UniProt:F6H153	EMBL:FN595227	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0003950
GO:GO:0004553	GO:GO:0005488	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016740
GO:GO:0016757	GO:GO:0016787	InterPro:IPR004170	InterPro:IPR012317	EntrezGene:LOC100245401	wikigene:LOC100245401
PFAM:PF00644	PFAM:PF12174	PFscan:PS50918	PFscan:PS51059	PANTHER:PTHR32263	PANTHER:PTHR32263:SF5
InterPro:Poly(ADP-ribose)pol_cat_dom	InterPro:RST	SUPFAM:SSF56399	UniParc:UPI00021097D2	ArrayExpress:VIT_18s0001g08290	EnsemblPlantsGene:VIT_18s0001g08290
EnsemblPlants:VIT_18s0001g08290.t01	InterPro:WWE-dom	RefSeq:XP_002283585	RefSeq:XP_002283585.2	RefSeq:XP_002283585.3	:

Description

Poly [ADP-ribose] polymerase [Source:UniProtKB/TrEMBL;Acc:F6H153]

Coordinates

chr18:+:6793889..6799338

Molecular Weight (calculated)

55040.7 Da

IEP (calculated)

8.707

GRAVY (calculated)

-0.467

Length

485 amino acids

Sequence
(BLAST)

001: MASILPSEIS RPKINVPRIG AVVPPNPRIR CKDYVQDCCS SHLEVQNQAN FERSGVPSRF MFYRDGSWVD FPSQVLENVR PGFLERKTTM DVSIDGSEYR
101: FDFLRMLQID ILTGKGRSIA WIDANGKCFF PKLFVSEEAA DGSENLNTKS KIRFGEYFGK RKRERLESQE ESEGNSSTNR EAVSRRWNSN DQEAVSKRQR
201: IQTTCDSETC KWPNVKLMKK GGRPYAMAEK FFLSRLKDTD PAVRVTAIHQ CTWKGPLEKA RWDVFHKQME RTKAAQGICN TTFAWHGTSA KTVASILTYG
301: FGVRSQIDGS EPHGFGIYLS SVRLPHISAM MSEADDNEEK HVLLCRVILG NVEMVEDGPL PSSVNFDTGV DNIENPTWYV VKWANMNTHI LPQCVVSYKS
401: SHNASGQMRP LAFLKWVPYS SNAFVVKLFS KLEILLPSEK VQELESWCKT YKDGKLPKGT FLKQLRTIVG DEVLLSTINE IRGSE

Best Arabidopsis Sequence Match ( AT1G32230.3 )
(BLAST)

001: MEAKIVKVLD SSRCEDGFGK KRKRAASYAA YVTGVSCAKL QNVPPPNGQC QIPDKRRRLE GENKLSAYEN RSGKALVRYY TYFKKTGIAK RVMMYENGEW
101: NDLPEHVICA IQNELEEKSA AIEFKLCGHS FILDFLHMQR LDMETGAKTP LAWIDNAGKC FFPEIYESDE RTNYCHHKCV EDPKQNAPHD IKLRLEIDVN
201: GGETPRLNLE ECSDESGDNM MDDVPLAQRS SNEHYDEATE DSCSRKLEAA VSKWDETDAI VVSGAKLTGS EVLDKDAVKK MFAVGTASLG HVPVLDVGRF
301: SSEIAEARLA LFQKQVEITK KHRGDANVRY AWLPAKREVL SAVMMQGLGV GGAFIRKSIY GVGIHLTAAD CPYFSARYCD VDENGVRYMV LCRVIMGNME
401: LLRGDKAQFF SGGEEYDNGV DDIESPKNYI VWNINMNTHI FPEFVVRFKL SNLPNAEGNL IAKRDNSGVT LEGPKDLPPQ LESNGARGSG SANSVGSSTT
501: RPKSPWMPFP TLFAAISHKV AENDMLLINA DYQQLRDKKM TRAEFVRKLR VIVGDDLLRS TITTLQNQVR

Arabidopsis Description

RCD1Poly [ADP-ribose] polymerase [Source:UniProtKB/TrEMBL;Acc:M5BF30]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.