Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G236400.2 | Wheat | nucleus | 63.07 | 66.51 |
| TraesCS4B01G235000.1 | Wheat | nucleus | 62.85 | 66.29 |
| TraesCS4A01G059400.1 | Wheat | nucleus | 62.85 | 66.29 |
| EER92605 | Sorghum | nucleus | 54.64 | 56.35 |
| Zm00001d028307_P001 | Maize | nucleus | 50.11 | 53.83 |
| Zm00001d047993_P001 | Maize | cytosol, nucleus, plastid | 51.84 | 53.57 |
| HORVU4Hr1G065800.1 | Barley | nucleus, plastid | 57.88 | 51.84 |
| GSMUA_Achr5P08960_001 | Banana | mitochondrion, nucleus | 36.07 | 35.01 |
| GSMUA_Achr7P27570_001 | Banana | cytosol, nucleus, plastid | 28.29 | 34.29 |
| Solyc04g077070.1.1 | Tomato | cytosol, extracellular, nucleus, plastid | 13.17 | 28.24 |
| Solyc01g057370.1.1 | Tomato | nucleus | 18.57 | 27.3 |
| Solyc04g077080.1.1 | Tomato | cytosol | 21.17 | 26.7 |
| PGSC0003DMT400012725 | Potato | cytosol | 23.11 | 25.66 |
| VIT_18s0001g08290.t01 | Wine grape | plastid | 26.57 | 25.36 |
| Solyc01g057360.1.1 | Tomato | cytosol | 16.85 | 25.32 |
| Solyc04g077090.1.1 | Tomato | cytosol | 22.89 | 23.93 |
| PGSC0003DMT400093081 | Potato | nucleus | 9.72 | 23.81 |
| Solyc04g077100.2.1 | Tomato | plastid | 22.25 | 23.73 |
| PGSC0003DMT400012724 | Potato | cytosol, nucleus, plastid | 25.49 | 23.14 |
| Os03t0854800-03 | Rice | nucleus | 23.11 | 18.32 |
| Os10t0577800-01 | Rice | nucleus | 23.33 | 18.27 |
| Os06t0248400-01 | Rice | nucleus | 19.44 | 11.73 |
| Os04t0672200-01 | Rice | extracellular | 22.25 | 10.74 |
Protein Annotations
| Gene3D:3.90.228.10 | MapMan:35.1 | EntrezGene:4332145 | ProteinID:ABF94777.1 | ProteinID:ABF94778.1 | ProteinID:BAF11370.1 |
| ProteinID:BAS83096.1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0003950 | GO:GO:0016740 | InterPro:IPR012317 |
| EnsemblPlantsGene:Os03g0230300 | EnsemblPlants:Os03t0230300-01 | PFAM:PF12174 | PFscan:PS51059 | PANTHER:PTHR32263 | PANTHER:PTHR32263:SF5 |
| InterPro:Poly(ADP-ribose)pol_cat_dom | UniProt:Q10PL7 | InterPro:RST | SUPFAM:SSF56399 | UniParc:UPI0000DB48EC | RefSeq:XP_015628077.1 |
| SEG:seg | : | : | : | : | : |
Description
SRO protein 1cHomologue of SRO (similar to RCD one), Regulation of stomatal closure, Abiotic stress response (Os03t0230300-01);Non-protein coding transcript. (Os03t0230300-02)
Coordinates
chr3:+:6895178..6898348
Molecular Weight (calculated)
50648.2 Da
IEP (calculated)
9.488
GRAVY (calculated)
-0.458
Length
463 amino acids
Sequence
(BLAST)
(BLAST)
001: MDFSGDVKPA IHRPSVAAAR GGGNGGAIPL LRGWQAFRRS GAPARLLCFE GGAWADVAGE VVGLLRRAFM EGKAVCEAAC GGRVFLFDFM RMVRIDEATA
101: EEAALGWIDD RGACFFPAPE GGRKRKRERD EAGSEVKGED RRRRQPAAEE EDGDEASSGV EERSGESRPE ADEPDRKKAR GTLWGKAVRL DEADKFYKVV
201: EKLFVSRMAP VAAARGVAIT AVHKVAQGPR ARAFHLQGQL LAAARGVGDG SNAKFAWYGA PAADVAAAVE HGFGRTNGQF LGGRAHGDGV HLSPPQYPHA
301: SAMLTKPDEN GEAHIVLCRV LMGRPEAVPA SSPQFHPSSD EYDSAVDNLE NPRWYVVWST DMNTRILPEY VVSFRWPNLP QMEGSSGLGS KLKKPSPAAT
401: RDMFPMLLTE IQRFVPSPKL QTLQRTYNCF KRGQMKKDQF IRFLRSHIGD NVLTTVAKKL RGY
101: EEAALGWIDD RGACFFPAPE GGRKRKRERD EAGSEVKGED RRRRQPAAEE EDGDEASSGV EERSGESRPE ADEPDRKKAR GTLWGKAVRL DEADKFYKVV
201: EKLFVSRMAP VAAARGVAIT AVHKVAQGPR ARAFHLQGQL LAAARGVGDG SNAKFAWYGA PAADVAAAVE HGFGRTNGQF LGGRAHGDGV HLSPPQYPHA
301: SAMLTKPDEN GEAHIVLCRV LMGRPEAVPA SSPQFHPSSD EYDSAVDNLE NPRWYVVWST DMNTRILPEY VVSFRWPNLP QMEGSSGLGS KLKKPSPAAT
401: RDMFPMLLTE IQRFVPSPKL QTLQRTYNCF KRGQMKKDQF IRFLRSHIGD NVLTTVAKKL RGY
001: MEAKIVKVLD SSRCEDGFGK KRKRAASYAA YVTGVSCAKL QNVPPPNGQC QIPDKRRRLE GENKLSAYEN RSGKALVRYY TYFKKTGIAK RVMMYENGEW
101: NDLPEHVICA IQNELEEKSA AIEFKLCGHS FILDFLHMQR LDMETGAKTP LAWIDNAGKC FFPEIYESDE RTNYCHHKCV EDPKQNAPHD IKLRLEIDVN
201: GGETPRLNLE ECSDESGDNM MDDVPLAQRS SNEHYDEATE DSCSRKLEAA VSKWDETDAI VVSGAKLTGS EVLDKDAVKK MFAVGTASLG HVPVLDVGRF
301: SSEIAEARLA LFQKQVEITK KHRGDANVRY AWLPAKREVL SAVMMQGLGV GGAFIRKSIY GVGIHLTAAD CPYFSARYCD VDENGVRYMV LCRVIMGNME
401: LLRGDKAQFF SGGEEYDNGV DDIESPKNYI VWNINMNTHI FPEFVVRFKL SNLPNAEGNL IAKRDNSGVT LEGPKDLPPQ LESNGARGSG SANSVGSSTT
501: RPKSPWMPFP TLFAAISHKV AENDMLLINA DYQQLRDKKM TRAEFVRKLR VIVGDDLLRS TITTLQNQVR
101: NDLPEHVICA IQNELEEKSA AIEFKLCGHS FILDFLHMQR LDMETGAKTP LAWIDNAGKC FFPEIYESDE RTNYCHHKCV EDPKQNAPHD IKLRLEIDVN
201: GGETPRLNLE ECSDESGDNM MDDVPLAQRS SNEHYDEATE DSCSRKLEAA VSKWDETDAI VVSGAKLTGS EVLDKDAVKK MFAVGTASLG HVPVLDVGRF
301: SSEIAEARLA LFQKQVEITK KHRGDANVRY AWLPAKREVL SAVMMQGLGV GGAFIRKSIY GVGIHLTAAD CPYFSARYCD VDENGVRYMV LCRVIMGNME
401: LLRGDKAQFF SGGEEYDNGV DDIESPKNYI VWNINMNTHI FPEFVVRFKL SNLPNAEGNL IAKRDNSGVT LEGPKDLPPQ LESNGARGSG SANSVGSSTT
501: RPKSPWMPFP TLFAAISHKV AENDMLLINA DYQQLRDKKM TRAEFVRKLR VIVGDDLLRS TITTLQNQVR
Arabidopsis Description
RCD1Poly [ADP-ribose] polymerase [Source:UniProtKB/TrEMBL;Acc:M5BF30]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.