Factsheet for PGSC0003DMT400012725

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
plastid 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plastid
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g077080.1.1	Tomato	cytosol	66.67	75.75
Solyc04g077090.1.1	Tomato	cytosol	68.35	64.33
Solyc01g057370.1.1	Tomato	nucleus	46.76	61.9
PGSC0003DMT400093081	Potato	nucleus	19.66	43.39
PGSC0003DMT400012724	Potato	cytosol, nucleus, plastid	45.32	37.06
GSMUA_Achr7P27570_001	Banana	cytosol, nucleus, plastid	25.42	27.75
TraesCS4A01G059400.1	Wheat	nucleus	28.3	26.88
TraesCS4D01G236400.2	Wheat	nucleus	28.06	26.65
TraesCS4B01G235000.1	Wheat	nucleus	27.58	26.2
VIT_18s0001g08290.t01	Wine grape	plastid	30.22	25.98
PGSC0003DMT400035039	Potato	cytosol	18.47	25.67
GSMUA_Achr5P08960_001	Banana	mitochondrion, nucleus	27.34	23.9
Zm00001d028307_P001	Maize	nucleus	24.7	23.9
EER92605	Sorghum	nucleus	25.42	23.61
Os03t0230300-01	Rice	nucleus	25.66	23.11
Zm00001d047993_P001	Maize	cytosol, nucleus, plastid	24.22	22.54
HORVU4Hr1G065800.1	Barley	nucleus, plastid	27.34	22.05
PGSC0003DMT400035056	Potato	cytosol	15.59	19.58
PGSC0003DMT400063250	Potato	nucleus	16.55	18.35
PGSC0003DMT400038368	Potato	nucleus	25.9	18.34
PGSC0003DMT400043197	Potato	nucleus	24.94	17.51

Protein Annotations

EnsemblPlants:PGSC0003DMT400012725	EnsemblPlantsGene:PGSC0003DMG400004960	Gene3D:3.90.228.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0003950
GO:GO:0016740	GO:GO:0016757	InterPro:IPR012317	InterPro:Poly(ADP-ribose)pol_cat_dom	PANTHER:PTHR32263	PANTHER:PTHR32263:SF5
PFAM:PF00644	PFscan:PS51059	PGSC:PGSC0003DMG400004960	SUPFAM:SSF56399	UniParc:UPI000296581F	UniProt:M1A1N9
MapMan:35.1	:	:	:	:	:

Description

Poly(ADP-ribose) polymerase, catalytic region [Source:PGSC_GENE;Acc:PGSC0003DMG400004960]

Coordinates

chr4:+:66094960..66101217

Molecular Weight (calculated)

48173.6 Da

IEP (calculated)

9.181

GRAVY (calculated)

-0.422

Length

417 amino acids

Sequence
(BLAST)

001: MMMRKTAIIS GNGKDVVDGK SKMRNEVLPL GRWPDHAQLL FQNHHNFKES GKPLRFKMYK DGSWMDFEKH AMDVLISAFV SGKAMIEVEM EAGFKLIVDF
101: YRMFGIDLDT GNELPICWID VDGNYFIPKM FIEDSEKGMR KRGIEVGSSS WLVIATPTEL LPPKWARTRS MREDEYAYQT VKGYLMSSRS GVTITAIHEC
201: IKSGLMEQVF IDNVEMVTRD RGNPKVVLAW YGSSSKNLNS IMHRGFELTR IEPGHRGIGI YLSPLQSPQI SEMMSDVDEN GEKHMILCRV ILGNLEKVEL
301: GSKQLFRSSV DFDTGVDDLI NPKLYVMWYH NMNTHILPQC IVSYKLDRHM PDQEQMERIQ KGKDQVSTPT RFSPFLRLKT KNKWNEFRKG RIKFLRVSSL
401: FRGHLQAAID RPRLEDQ

Best Arabidopsis Sequence Match ( AT1G32230.3 )
(BLAST)

001: MEAKIVKVLD SSRCEDGFGK KRKRAASYAA YVTGVSCAKL QNVPPPNGQC QIPDKRRRLE GENKLSAYEN RSGKALVRYY TYFKKTGIAK RVMMYENGEW
101: NDLPEHVICA IQNELEEKSA AIEFKLCGHS FILDFLHMQR LDMETGAKTP LAWIDNAGKC FFPEIYESDE RTNYCHHKCV EDPKQNAPHD IKLRLEIDVN
201: GGETPRLNLE ECSDESGDNM MDDVPLAQRS SNEHYDEATE DSCSRKLEAA VSKWDETDAI VVSGAKLTGS EVLDKDAVKK MFAVGTASLG HVPVLDVGRF
301: SSEIAEARLA LFQKQVEITK KHRGDANVRY AWLPAKREVL SAVMMQGLGV GGAFIRKSIY GVGIHLTAAD CPYFSARYCD VDENGVRYMV LCRVIMGNME
401: LLRGDKAQFF SGGEEYDNGV DDIESPKNYI VWNINMNTHI FPEFVVRFKL SNLPNAEGNL IAKRDNSGVT LEGPKDLPPQ LESNGARGSG SANSVGSSTT
501: RPKSPWMPFP TLFAAISHKV AENDMLLINA DYQQLRDKKM TRAEFVRKLR VIVGDDLLRS TITTLQNQVR

Arabidopsis Description

RCD1Poly [ADP-ribose] polymerase [Source:UniProtKB/TrEMBL;Acc:M5BF30]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.