Factsheet for PGSC0003DMT400043197

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400007050
PGSC0003DMT400013624
PGSC0003DMT400015830
PGSC0003DMT400022771
PGSC0003DMT400027579
PGSC0003DMT400031184
PGSC0003DMT400036757
PGSC0003DMT400037405
PGSC0003DMT400044878
PGSC0003DMT400049592
PGSC0003DMT400058653
PGSC0003DMT400063187
PGSC0003DMT400066807
PGSC0003DMT400069498
PGSC0003DMT400072644
PGSC0003DMT400074143

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G32230.1	PGSC0003DMT400069498	AT1G06040.1	11018516
AT1G32230.1	PGSC0003DMT400069498	AT1G06040.1	19548978
AT1G32230.1	PGSC0003DMT400063187	AT1G74890.1	19548978
AT1G32230.1	PGSC0003DMT400027579	AT2G01980.1	17023541
AT1G32230.1	PGSC0003DMT400058653	AT2G01980.1	17023541
AT1G32230.1	PGSC0003DMT400015830	AT2G16770.1	19548978
AT1G32230.1	PGSC0003DMT400031184	AT2G16770.1	19548978
AT1G32230.1	PGSC0003DMT400036757	AT2G33550.1	19548978
AT1G32230.1	PGSC0003DMT400022771	AT2G37630.1	19548978
AT1G32230.1	PGSC0003DMT400066807	AT4G00050.1	19548978
AT1G32230.1	PGSC0003DMT400007050	AT5G03760.1	19548978
AT1G32230.1	PGSC0003DMT400072644	AT5G03760.1	19548978
AT1G32230.1	PGSC0003DMT400013624	AT5G48250.1	19548978
AT1G32230.1	PGSC0003DMT400044878	AT5G48250.1	19548978
AT1G32230.1	PGSC0003DMT400074143	AT5G48250.1	19548978
AT1G32230.1	PGSC0003DMT400037405	AT5G54680.1	19548978
AT1G32230.1	PGSC0003DMT400049592	AT5G54680.1	19548978

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g066330.2.1	Tomato	nucleus	78.28	78.28
PGSC0003DMT400038368	Potato	nucleus	46.97	47.37
VIT_02s0012g01920.t01	Wine grape	cytosol	35.19	39.21
VIT_02s0012g01930.t01	Wine grape	nucleus	39.9	38.04
Bra023252.1-P	Field mustard	nucleus	29.46	36.31
CDY22597	Canola	nucleus	31.82	34.74
CDY31694	Canola	nucleus	30.81	34.66
CDY60257	Canola	cytosol	18.86	34.25
CDY67026	Canola	nucleus	31.48	34.0
Bra005336.1-P	Field mustard	cytosol, nucleus, plastid	29.8	33.78
KRH74370	Soybean	mitochondrion, nucleus, plastid	33.0	33.62
CDY32124	Canola	nucleus	29.63	33.21
KRH39574	Soybean	mitochondrion, nucleus, plastid	32.32	32.93
Bra017317.1-P	Field mustard	nucleus	29.29	32.83
CDX84199	Canola	cytosol, nucleus, plastid	26.77	32.25
AT1G32230.1	Thale cress	nucleus	31.82	32.09
Bra035511.1-P	Field mustard	cytosol	29.97	31.9
CDY43007	Canola	nucleus	31.14	31.84
GSMUA_Achr11P...	Banana	nucleus	27.78	31.73
AT2G35510.3	Thale cress	cytosol	29.97	31.34
GSMUA_Achr2P18060_001	Banana	nucleus	29.46	30.43
GSMUA_Achr5P14120_001	Banana	nucleus	28.79	30.21
CDY41739	Canola	cytosol	27.61	29.82
TraesCS1A01G195400.4	Wheat	cytosol	29.63	29.73
TraesCS1B01G210300.4	Wheat	peroxisome	29.46	29.71
TraesCS1D01G199200.1	Wheat	cytosol, nucleus, plastid	29.29	29.39
GSMUA_Achr8P14660_001	Banana	cytosol, endoplasmic reticulum, nucleus	26.77	28.91
HORVU1Hr1G050960.7	Barley	nucleus	29.63	28.9
GSMUA_Achr4P19000_001	Banana	nucleus	19.87	28.16
Os10t0577800-01	Rice	nucleus	27.95	28.09
KXG38822	Sorghum	nucleus	28.11	28.07
EER90487	Sorghum	nucleus	26.94	27.92
PGSC0003DMT400035039	Potato	cytosol	13.97	27.67
Zm00001d030110_P001	Maize	mitochondrion, nucleus	27.61	27.52
TraesCS4A01G321300.1	Wheat	nucleus	26.26	27.42
TraesCS5D01G551800.3	Wheat	nucleus	26.6	27.34
HORVU5Hr1G124010.1	Barley	nucleus	26.6	27.29
Zm00001d014423_P002	Maize	nucleus	27.95	27.08
Os03t0854800-03	Rice	nucleus	26.6	27.05
TraesCS5B01G557500.2	Wheat	nucleus	26.09	26.82
KRH74373	Soybean	mitochondrion	20.71	25.79
PGSC0003DMT400012725	Potato	cytosol	17.51	24.94
HORVU0Hr1G014460.1	Barley	nucleus	23.74	24.44
PGSC0003DMT400035056	Potato	cytosol	13.13	23.49
Zm00001d012821_P003	Maize	extracellular, vacuole	25.76	23.32
PGSC0003DMT400063250	Potato	nucleus	13.8	21.81
PGSC0003DMT400012724	Potato	cytosol, nucleus, plastid	17.51	20.39
PGSC0003DMT400093081	Potato	nucleus	5.05	15.87

Protein Annotations

EnsemblPlants:PGSC0003DMT400043197	EnsemblPlantsGene:PGSC0003DMG401016766	EntrezGene:102582509	Gene3D:3.90.228.10	GO:GO:0003674	GO:GO:0003824
GO:GO:0003950	GO:GO:0016740	InterPro:IPR012317	InterPro:Poly(ADP-ribose)pol_cat_dom	InterPro:RST	PANTHER:PTHR32263
PANTHER:PTHR32263:SF4	PFAM:PF12174	PFscan:PS51059	PGSC:PGSC0003DMG401016766	RefSeq:XP_006365970.1	SUPFAM:SSF56399
UniParc:UPI0002968E46	UniProt:M1BE85	MapMan:35.1	:	:	:

Description

Ceo protein [Source:PGSC_GENE;Acc:PGSC0003DMG401016766]

Coordinates

chr6:-:45228611..45234940

Molecular Weight (calculated)

67473.0 Da

IEP (calculated)

6.996

GRAVY (calculated)

-0.414

Length

594 amino acids

Sequence
(BLAST)

001: MEPKGVGLLD SGRRTVVGAK SKVASQNLAH LFRASSEKIS IQSNCDSKLE KRKRIVDCES NCQSHLRKSV HKNYLNFKRS RLPQRVLFYQ NGEWTDFPQD
101: IIPIVKEDFQ AKKAVIEVKV CDFHIILDTL HMVQIDMING LQKPIAWIDE VGRCFFPESY LISSEMHGNF ETLLKRTEEF MTTEPARITD IKLQLDIDLN
201: GLDNRNLEED VEESNIGYKR IKVYPPKDSQ EFADYKKSDA KMEQVAENKQ NQETPSPDLV ASLILVNAES VENMFIMGMN VIPNKDEIKI TKCSSNYLRT
301: HLELFEKQVE ITQKYRGNAN VRYAWLAASK DLISTIMKYG LAPGGPKYRP KFGVGVHLSA LHCAFKSAIN CDADENGVHY MVFARVILGN VEPLHCGSEQ
401: WHPSDEKYDS GVDDLENPTH YVVWNMNLNT HIYPVCVVSF KIPPGAEGPH FGNDSRIDVS GVNTCPRGPV EQGSHRYQIS LVKLALEEAA RIPKSLGVPF
501: SLLIDAISNE VTAEKMNHVT RNLELLEFKK ICRDEFEKRL RFIVGDTLLK STMKSLLCKI QSKPIELVQP KQEPQSAAFK GNTAQFHWLE PQTE

Best Arabidopsis Sequence Match ( AT1G32230.1 )
(BLAST)

001: MEAKIVKVLD SSRCEDGFGK KRKRAASYAA YVTGVSCAKL QNVPPPNGQC QIPDKRRRLE GENKLSAYEN RSGKALVRYY TYFKKTGIAK RVMMYENGEW
101: NDLPEHVICA IQNELEEKSA AIEFKLCGHS FILDFLHMQR LDMETGAKTP LAWIDNAGKC FFPEIYESDE RTNYCHHKCV EDPKQNAPHD IKLRLEIDVN
201: GGETPRLNLE ECSDESGDNM MDDVPLAQRS SNEHYDEATE DSCSRKLEAA VSKWDETDAI VVSGAKLTGS EVLDKDAVKK MFAVGTASLG HVPVLDVGRF
301: SSEIAEARLA LFQKQVEITK KHRGDANVRY AWLPAKREVL SAVMMQGLGV GGAFIRKSIY GVGIHLTAAD CPYFSARYCD VDENGVRYMV LCRVIMGNME
401: LLRGDKAQFF SGGEEYDNGV DDIESPKNYI VWNINMNTHI FPEFVVRFKL SNLPNAEGNL IAKRDNSGVT LEGPKDLPPQ LESNQGARGS GSANSVGSST
501: TRPKSPWMPF PTLFAAISHK VAENDMLLIN ADYQQLRDKK MTRAEFVRKL RVIVGDDLLR STITTLQNQP KSKEIPGSIR DHEEGAGGL

Arabidopsis Description

RCD1Poly [ADP-ribose] polymerase [Source:UniProtKB/TrEMBL;Acc:M5BF30]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.