Factsheet for PGSC0003DMT400066807

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400038368
PGSC0003DMT400043197

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G00050.1	PGSC0003DMT400038368	AT1G32230.1	19548978
AT4G00050.1	PGSC0003DMT400043197	AT1G32230.1	19548978

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g090790.2.1	Tomato	nucleus	94.18	94.18
AT4G00050.1	Thale cress	nucleus	50.22	58.4
VIT_15s0021g02690.t01	Wine grape	nucleus	56.9	56.77
KRH75301	Soybean	nucleus	54.96	55.68
KRG88937	Soybean	nucleus	54.74	54.62
CDX74328	Canola	nucleus	45.04	54.01
CDX83214	Canola	nucleus	40.3	53.74
CDX91917	Canola	nucleus	40.09	53.6
CDY65390	Canola	nucleus	24.14	53.59
Bra037312.1-P	Field mustard	nucleus	24.14	53.59
Bra000560.1-P	Field mustard	nucleus	44.61	53.35
CDY21498	Canola	nucleus	43.97	52.71
TraesCS1B01G226200.2	Wheat	nucleus	35.13	35.82
Os10t0556200-01	Rice	nucleus	35.56	35.48
HORVU1Hr1G054260.3	Barley	nucleus	35.34	35.34
TraesCS1A01G212700.1	Wheat	nucleus	34.27	34.95
TraesCS1D01G215600.2	Wheat	nucleus	34.05	34.73
Zm00001d029898_P001	Maize	nucleus	36.42	34.49
OQU92150	Sorghum	nucleus	37.93	32.77
PGSC0003DMT400063117	Potato	nucleus	30.6	32.49
PGSC0003DMT400083164	Potato	nucleus	26.08	29.09
PGSC0003DMT400020534	Potato	nucleus	15.3	22.61
PGSC0003DMT400015377	Potato	nucleus	9.27	21.18
PGSC0003DMT400038134	Potato	nucleus	21.77	19.61
PGSC0003DMT400010253	Potato	nucleus	15.73	19.41
PGSC0003DMT400048756	Potato	nucleus	24.14	19.38
PGSC0003DMT400041156	Potato	nucleus	18.75	16.83
PGSC0003DMT400015596	Potato	nucleus	10.34	15.84
PGSC0003DMT400049768	Potato	nucleus	9.91	15.23
PGSC0003DMT400034840	Potato	nucleus	9.48	14.86
PGSC0003DMT400047079	Potato	nucleus	22.63	14.83
PGSC0003DMT400020244	Potato	nucleus	12.07	14.66
PGSC0003DMT400028917	Potato	nucleus	13.58	14.19

Protein Annotations

EntrezGene:102583621	MapMan:15.5.32	Gene3D:4.10.280.10	ncoils:Coil	GO:GO:0000003	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0008150	GO:GO:0009506	GO:GO:0009567
GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	UniProt:M1CG83	PFAM:PF00010
EnsemblPlantsGene:PGSC0003DMG400025976	PGSC:PGSC0003DMG400025976	EnsemblPlants:PGSC0003DMT400066807	PFscan:PS50888	PANTHER:PTHR12565	PANTHER:PTHR12565:SF173
SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI000295D41F	RefSeq:XP_006347913.1	InterPro:bHLH_dom	SEG:seg

Description

Putative bHLH transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400025976]

Coordinates

chr1:-:70077080..70081427

Molecular Weight (calculated)

50750.9 Da

IEP (calculated)

7.776

GRAVY (calculated)

-0.704

Length

464 amino acids

Sequence
(BLAST)

001: MNQCVPSWDL DDSTVPRKNP IQTQSNSLAA DVPSLNYEVA ELTWENGQLA MHGLGPPRAN NKPISSYGGT LESIVNQATR CNDVPPHLHG KSTVDRNKNG
101: GDEVVPWFNN HNAVAYAPPA TGLVTMTKDA LVPCSRNTSN SDNHRSVHVP GIDGSTHVGS CSGATNSRDW MVAPRMRVRP TKREWNSRTD MISVSGSETC
201: GGDSRQLTVD TFDREFGTTM YTSTSMGSPE NTSSDKQCTN RTGDDHDSVC HSRDEREAGD DEDDNNKKGS KNSSCFTKRK RAAAIHNQSE RKRRDKINQR
301: MKTLQKLVPN SSKTDKASML DEVIEYLKQL QAQVHMMSRM NMSPAMMLPL AMQQQLQMSM MGMGMGMGMG MGVAGVFDIN NLSRPNIPGL PSFLHPSAAT
401: AAFMQPMTSW DNSSAAPPPP PAMPDPLAAL LACQSQPINM DAYRRMAALY QQFQQPPTGS GPKN

Best Arabidopsis Sequence Match ( AT4G00050.1 )
(BLAST)

001: MSQCVPNCHI DDTPAAATTT VRSTTAADIP ILDYEVAELT WENGQLGLHG LGPPRVTASS TKYSTGAGGT LESIVDQATR LPNPKPTDEL VPWFHHRSSR
101: AAMAMDALVP CSNLVHEQQS KPGGVGSTRV GSCSDGRTMG GGKRARVAPE WSGGGSQRLT MDTYDVGFTS TSMGSHDNTI DDHDSVCHSR PQMEDEEEKK
201: AGGKSSVSTK RSRAAAIHNQ SERKRRDKIN QRMKTLQKLV PNSSKTDKAS MLDEVIEYLK QLQAQVSMMS RMNMPSMMLP MAMQQQQQLQ MSLMSNPMGL
301: GMGMGMPGLG LLDLNSMNRA AASAPNIHAN MMPNPFLPMN CPSWDASSND SRFQSPLIPD PMSAFLACST QPTTMEAYSR MATLYQQMQQ QLPPPSNPK

Arabidopsis Description

UNE10Transcription factor UNE10 [Source:UniProtKB/Swiss-Prot;Acc:Q8GZ38]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.