Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_02s0012g01920.t01 | |
| VIT_02s0012g01930.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G00050.1 | VIT_02s0012g01920.t01 | AT1G32230.1 | 19548978 |
| AT4G00050.1 | VIT_02s0012g01930.t01 | AT1G32230.1 | 19548978 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH75301 | Soybean | nucleus | 61.72 | 62.66 |
| KRG88937 | Soybean | nucleus | 61.51 | 61.51 |
| AT4G00050.1 | Thale cress | nucleus | 52.47 | 61.15 |
| CDX74328 | Canola | nucleus | 48.39 | 58.14 |
| CDX83214 | Canola | nucleus | 43.44 | 58.05 |
| Bra000560.1-P | Field mustard | nucleus | 48.39 | 57.99 |
| CDX91917 | Canola | nucleus | 42.8 | 57.35 |
| Solyc01g090790.2.1 | Tomato | nucleus | 57.2 | 57.33 |
| CDY21498 | Canola | nucleus | 47.53 | 57.11 |
| PGSC0003DMT400066807 | Potato | nucleus | 56.77 | 56.9 |
| CDY65390 | Canola | nucleus | 23.66 | 52.63 |
| Bra037312.1-P | Field mustard | nucleus | 23.66 | 52.63 |
| VIT_17s0000g06930.t01 | Wine grape | nucleus | 38.71 | 42.55 |
| Os10t0556200-01 | Rice | nucleus | 38.92 | 38.92 |
| TraesCS1B01G226200.2 | Wheat | nucleus | 37.85 | 38.68 |
| TraesCS1D01G215600.2 | Wheat | nucleus | 37.42 | 38.24 |
| HORVU1Hr1G054260.3 | Barley | nucleus | 37.85 | 37.93 |
| TraesCS1A01G212700.1 | Wheat | nucleus | 36.99 | 37.8 |
| Zm00001d029898_P001 | Maize | nucleus | 39.35 | 37.35 |
| OQU92150 | Sorghum | nucleus | 39.78 | 34.45 |
| VIT_07s0005g02510.t01 | Wine grape | nucleus | 11.61 | 27.0 |
| VIT_18s0001g10270.t01 | Wine grape | nucleus | 15.91 | 20.05 |
| VIT_07s0031g00450.t01 | Wine grape | nucleus, plastid | 16.77 | 19.8 |
| VIT_07s0005g05100.t01 | Wine grape | mitochondrion, nucleus | 18.49 | 18.61 |
| VIT_12s0028g01110.t01 | Wine grape | nucleus | 21.29 | 17.74 |
| VIT_05s0020g04620.t01 | Wine grape | nucleus | 11.18 | 16.61 |
| VIT_14s0060g00260.t01 | Wine grape | nucleus | 22.8 | 14.95 |
| VIT_07s0141g00220.t01 | Wine grape | nucleus | 9.25 | 14.88 |
| VIT_14s0030g02230.t01 | Wine grape | nucleus | 10.54 | 14.8 |
| VIT_11s0037g00040.t01 | Wine grape | nucleus | 14.62 | 13.49 |
| VIT_11s0016g00380.t01 | Wine grape | nucleus | 13.33 | 11.57 |
Protein Annotations
| EntrezGene:100244381 | wikigene:100244381 | MapMan:15.5.32 | Gene3D:4.10.280.10 | ProteinID:CCB43840 | ProteinID:CCB43840.1 |
| ncoils:Coil | UniProt:F6GV58 | EMBL:FN594952 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | EntrezGene:LOC100244381 | wikigene:LOC100244381 |
| PFAM:PF00010 | PFscan:PS50888 | PANTHER:PTHR12565 | PANTHER:PTHR12565:SF173 | SMART:SM00353 | SUPFAM:SSF47459 |
| UniParc:UPI0002109A06 | ArrayExpress:VIT_15s0021g02690 | EnsemblPlantsGene:VIT_15s0021g02690 | EnsemblPlants:VIT_15s0021g02690.t01 | RefSeq:XP_002275629 | RefSeq:XP_002275629.2 |
| InterPro:bHLH_dom | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr15:-:13708507..13712216
Molecular Weight (calculated)
50210.7 Da
IEP (calculated)
7.606
GRAVY (calculated)
-0.531
Length
465 amino acids
Sequence
(BLAST)
(BLAST)
001: MSQCVPSWDI DDNPTPPRLF LRSHSNSTAP DVPMLDYEVA ELTWENGQLA MHGLGQPRVP AKPVASAAVS KYPWEKPRAG GTLESIVNQA TRLPHHKPPP
101: EGANDDLVPW LDHQRAVAAA AAAASVAMTM DALVPCSNNN NTTNNNNPSH VMDSVPAGLG PCGGGSSTRV GSCSGGATKD DDAILPGKRE RVARVPSTHD
201: WSSRDQSVTG SATFDLDSQQ VTLDTCDLGS PENTSSGKPC TKTITVDDHD SVCHSRPQRR AGDEEDKKRG TGKSSVSSKR SRAAAIHNQS ERKRRDKINQ
301: RMKTLQKLVP NSSKTDKASM LDEVIEYLKQ LQAQVQMMNR MNMSPMMMPM TLQQQLQMSL MAQMGMGMGM SPMGMGVVDM NTIARPNVAT TGISPLLHPT
401: PFLPLTSWDV SGDRLPAAPT MVPDPLAAFL ACQSQPMTMD AYSRMAALYQ HLHQHPASSA RSQGL
101: EGANDDLVPW LDHQRAVAAA AAAASVAMTM DALVPCSNNN NTTNNNNPSH VMDSVPAGLG PCGGGSSTRV GSCSGGATKD DDAILPGKRE RVARVPSTHD
201: WSSRDQSVTG SATFDLDSQQ VTLDTCDLGS PENTSSGKPC TKTITVDDHD SVCHSRPQRR AGDEEDKKRG TGKSSVSSKR SRAAAIHNQS ERKRRDKINQ
301: RMKTLQKLVP NSSKTDKASM LDEVIEYLKQ LQAQVQMMNR MNMSPMMMPM TLQQQLQMSL MAQMGMGMGM SPMGMGVVDM NTIARPNVAT TGISPLLHPT
401: PFLPLTSWDV SGDRLPAAPT MVPDPLAAFL ACQSQPMTMD AYSRMAALYQ HLHQHPASSA RSQGL
001: MSQCVPNCHI DDTPAAATTT VRSTTAADIP ILDYEVAELT WENGQLGLHG LGPPRVTASS TKYSTGAGGT LESIVDQATR LPNPKPTDEL VPWFHHRSSR
101: AAMAMDALVP CSNLVHEQQS KPGGVGSTRV GSCSDGRTMG GGKRARVAPE WSGGGSQRLT MDTYDVGFTS TSMGSHDNTI DDHDSVCHSR PQMEDEEEKK
201: AGGKSSVSTK RSRAAAIHNQ SERKRRDKIN QRMKTLQKLV PNSSKTDKAS MLDEVIEYLK QLQAQVSMMS RMNMPSMMLP MAMQQQQQLQ MSLMSNPMGL
301: GMGMGMPGLG LLDLNSMNRA AASAPNIHAN MMPNPFLPMN CPSWDASSND SRFQSPLIPD PMSAFLACST QPTTMEAYSR MATLYQQMQQ QLPPPSNPK
101: AAMAMDALVP CSNLVHEQQS KPGGVGSTRV GSCSDGRTMG GGKRARVAPE WSGGGSQRLT MDTYDVGFTS TSMGSHDNTI DDHDSVCHSR PQMEDEEEKK
201: AGGKSSVSTK RSRAAAIHNQ SERKRRDKIN QRMKTLQKLV PNSSKTDKAS MLDEVIEYLK QLQAQVSMMS RMNMPSMMLP MAMQQQQQLQ MSLMSNPMGL
301: GMGMGMPGLG LLDLNSMNRA AASAPNIHAN MMPNPFLPMN CPSWDASSND SRFQSPLIPD PMSAFLACST QPTTMEAYSR MATLYQQMQQ QLPPPSNPK
Arabidopsis Description
UNE10Transcription factor UNE10 [Source:UniProtKB/Swiss-Prot;Acc:Q8GZ38]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.