Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr9P11300_001 | Banana | nucleus | 12.47 | 73.02 |
| CDY37185 | Canola | mitochondrion | 16.53 | 62.24 |
| TraesCS6A01G190600.1 | Wheat | nucleus | 17.07 | 48.84 |
| Solyc04g078690.2.1 | Tomato | nucleus | 40.11 | 47.13 |
| PGSC0003DMT400020534 | Potato | nucleus | 39.57 | 46.5 |
| KRH15381 | Soybean | nucleus | 33.33 | 41.41 |
| KRH05665 | Soybean | nucleus | 33.06 | 41.08 |
| CDY24734 | Canola | plastid | 15.45 | 40.14 |
| VIT_07s0031g00450.t01 | Wine grape | nucleus, plastid | 42.82 | 40.1 |
| KRH04711 | Soybean | plastid | 17.34 | 40.0 |
| AT5G67110.1 | Thale cress | nucleus | 22.49 | 39.52 |
| Bra012133.1-P | Field mustard | nucleus, plastid | 22.49 | 38.78 |
| CDY12804 | Canola | nucleus, plastid | 22.49 | 38.43 |
| CDY01438 | Canola | nucleus, plastid | 22.49 | 38.07 |
| OQU75890 | Sorghum | nucleus | 28.46 | 36.08 |
| Os06t0164400-01 | Rice | cytosol, mitochondrion, nucleus | 18.43 | 34.52 |
| GSMUA_Achr8P15670_001 | Banana | nucleus | 31.98 | 33.43 |
| Os02t0805250-00 | Rice | nucleus | 25.2 | 33.21 |
| GSMUA_Achr10P... | Banana | plastid | 30.62 | 32.94 |
| TraesCS7A01G126900.1 | Wheat | nucleus | 28.46 | 31.72 |
| TraesCS7D01G124700.1 | Wheat | nucleus | 28.73 | 31.36 |
| TraesCS7B01G026300.1 | Wheat | nucleus | 28.18 | 30.68 |
| HORVU7Hr1G026560.2 | Barley | nucleus | 27.64 | 30.18 |
| KXG31309 | Sorghum | nucleus | 23.58 | 29.79 |
| VIT_07s0005g02510.t01 | Wine grape | nucleus | 15.99 | 29.5 |
| Zm00001d045212_P001 | Maize | nucleus | 26.83 | 29.2 |
| HORVU6Hr1G088020.4 | Barley | nucleus | 23.31 | 29.05 |
| TraesCS6A01G373500.2 | Wheat | nucleus | 23.04 | 28.05 |
| TraesCS6D01G357700.1 | Wheat | nucleus | 22.49 | 27.95 |
| TraesCS6B01G411300.1 | Wheat | nucleus | 22.22 | 27.06 |
| Zm00001d018416_P001 | Maize | mitochondrion | 22.76 | 25.45 |
| VIT_17s0000g06930.t01 | Wine grape | nucleus | 20.05 | 17.49 |
| VIT_07s0141g00220.t01 | Wine grape | nucleus | 13.28 | 16.95 |
| GSMUA_Achr7P20810_001 | Banana | nucleus | 26.83 | 16.53 |
| VIT_15s0021g02690.t01 | Wine grape | nucleus | 20.05 | 15.91 |
| VIT_05s0020g04620.t01 | Wine grape | nucleus | 13.28 | 15.65 |
| VIT_12s0028g01110.t01 | Wine grape | nucleus | 22.49 | 14.87 |
| VIT_14s0030g02230.t01 | Wine grape | nucleus | 13.28 | 14.8 |
| VIT_07s0005g05100.t01 | Wine grape | mitochondrion, nucleus | 18.43 | 14.72 |
| VIT_14s0060g00260.t01 | Wine grape | nucleus | 27.91 | 14.53 |
| VIT_11s0037g00040.t01 | Wine grape | nucleus | 17.34 | 12.7 |
| VIT_11s0016g00380.t01 | Wine grape | nucleus | 14.91 | 10.26 |
Protein Annotations
| EntrezGene:100245419 | wikigene:100245419 | MapMan:15.5.32 | Gene3D:4.10.280.10 | ProteinID:CBI19497 | ProteinID:CBI19497.3 |
| ncoils:Coil | UniProt:E0CPT4 | EMBL:FN595227 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | EntrezGene:LOC100245419 | wikigene:LOC100245419 |
| PFAM:PF00010 | PFscan:PS50888 | PANTHER:PTHR12565 | PANTHER:PTHR12565:SF306 | SMART:SM00353 | SUPFAM:SSF47459 |
| UniParc:UPI00019854A8 | ArrayExpress:VIT_18s0001g10270 | EnsemblPlantsGene:VIT_18s0001g10270 | EnsemblPlants:VIT_18s0001g10270.t01 | unigene:Vvi.25466 | RefSeq:XP_002284880 |
| RefSeq:XP_002284880.1 | InterPro:bHLH_dom | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr18:+:8609001..8612922
Molecular Weight (calculated)
39668.1 Da
IEP (calculated)
6.510
GRAVY (calculated)
-0.524
Length
369 amino acids
Sequence
(BLAST)
(BLAST)
001: MADLYGTNVS SSATALALES EDISAFLHHF LHNQSSSSTT TSTIKAKHAH SFSPALLHPE TASAAEVLSP QKDRRRFSRS AILSDSDCRV RSGLSTAGSS
101: AVVESSTGIN FSDHGAYCPA GMKETAGNTF SSIAAVDSEA ITVSRKRRMF SMENSVDDFG CDSEKGPEAS DVPSNPAPSR SSSKRSRAAE VHNLSEKRRR
201: SRINEKMKAL QNLIPNSNKT DKASMLDEAI EYLKQLQLQV QMLTMRNGLS LHPIYLPGAL QPTQLPQTGA GFAEGNLLLS NSGTGTLPAN QEISMQTTFD
301: LTSQPIAIPT MTNMNNSDTS FGFEHSDQPH YGPFNLTGSS KEICHEEALP EPQGEMNCSR KNSSSGVSS
101: AVVESSTGIN FSDHGAYCPA GMKETAGNTF SSIAAVDSEA ITVSRKRRMF SMENSVDDFG CDSEKGPEAS DVPSNPAPSR SSSKRSRAAE VHNLSEKRRR
201: SRINEKMKAL QNLIPNSNKT DKASMLDEAI EYLKQLQLQV QMLTMRNGLS LHPIYLPGAL QPTQLPQTGA GFAEGNLLLS NSGTGTLPAN QEISMQTTFD
301: LTSQPIAIPT MTNMNNSDTS FGFEHSDQPH YGPFNLTGSS KEICHEEALP EPQGEMNCSR KNSSSGVSS
001: MISQREEREE KKQRVMGDKK LISSSSSSSV YDTRINHHLH HPPSSSDEIS QFLRHIFDRS SPLPSYYSPA TTTTTASLIG VHGSGDPHAD NSRSLVSHHP
101: PSDSVLMSKR VGDFSEVLIG GGSGSAAACF GFSGGGNNNN VQGNSSGTRV SSSSVGASGN ETDEYDCESE EGGEAVVDEA PSSKSGPSSR SSSKRCRAAE
201: VHNLSEKRRR SRINEKMKAL QSLIPNSNKT DKASMLDEAI EYLKQLQLQV QMLTMRNGIN LHPLCLPGTT LHPLQLSQIR PPEATNDPLL NHTNQFASTS
301: NAPEMINTVA SSYALEPSIR SHFGPFPLLT SPVEMSREGG LTHPRLNIGH SNANITGEQA LFDGQPDLKD RIT
101: PSDSVLMSKR VGDFSEVLIG GGSGSAAACF GFSGGGNNNN VQGNSSGTRV SSSSVGASGN ETDEYDCESE EGGEAVVDEA PSSKSGPSSR SSSKRCRAAE
201: VHNLSEKRRR SRINEKMKAL QSLIPNSNKT DKASMLDEAI EYLKQLQLQV QMLTMRNGIN LHPLCLPGTT LHPLQLSQIR PPEATNDPLL NHTNQFASTS
301: NAPEMINTVA SSYALEPSIR SHFGPFPLLT SPVEMSREGG LTHPRLNIGH SNANITGEQA LFDGQPDLKD RIT
Arabidopsis Description
SPTSPT [Source:UniProtKB/TrEMBL;Acc:A0A178UVX7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.