Factsheet for Zm00001d045212_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

mitochondrion 3
nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d005841_P001
Zm00001d020705_P001
Zm00001d031781_P001
Zm00001d035027_P001
Zm00001d049721_P001
Zm00001d050016_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G36930.1	Zm00001d005841_P001	AT3G50330.1	17855426
AT4G36930.1	Zm00001d020705_P001	AT3G50330.1	17855426
AT4G36930.1	Zm00001d031781_P001	AT3G50330.1	17855426
AT4G36930.1	Zm00001d050016_P001	AT3G50330.1	17855426
AT4G36930.1	Zm00001d035027_P001	AT5G09750.1	17855426
AT4G36930.1	Zm00001d049721_P001	AT5G09750.1	17855426
AT4G36930.1	Zm00001d005841_P001	AT5G67060.1	17855426
AT4G36930.1	Zm00001d020705_P001	AT5G67060.1	17855426
AT4G36930.1	Zm00001d031781_P001	AT5G67060.1	17855426
AT4G36930.1	Zm00001d050016_P001	AT5G67060.1	17855426

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU75890	Sorghum	nucleus	70.8	82.47
CDY37185	Canola	mitochondrion	17.4	60.2
TraesCS7A01G126900.1	Wheat	nucleus	57.82	59.21
TraesCS7D01G124700.1	Wheat	nucleus	58.7	58.88
HORVU7Hr1G026560.2	Barley	nucleus	58.11	58.28
TraesCS6A01G190600.1	Wheat	nucleus	22.12	58.14
TraesCS7B01G026300.1	Wheat	nucleus	57.52	57.52
Os06t0164400-01	Rice	cytosol, mitochondrion, nucleus	33.33	57.36
AT5G67110.1	Thale cress	nucleus	21.53	34.76
Bra012133.1-P	Field mustard	nucleus, plastid	21.83	34.58
CDY24734	Canola	plastid	14.45	34.51
KRH04711	Soybean	plastid	16.22	34.38
CDY12804	Canola	nucleus, plastid	21.53	33.8
CDY01438	Canola	nucleus, plastid	21.53	33.49
KRH04595	Soybean	nucleus	26.55	33.09
KRH28453	Soybean	nucleus	28.32	32.99
PGSC0003DMT400020534	Potato	nucleus	27.73	29.94
Solyc04g078690.2.1	Tomato	nucleus	27.43	29.62
VIT_07s0031g00450.t01	Wine grape	nucleus, plastid	33.33	28.68
Zm00001d018416_P001	Maize	mitochondrion	27.73	28.48
CDY44048	Canola	nucleus, plastid	28.02	27.86
Bra010591.1-P	Field mustard	nucleus, plastid	28.02	27.86
KRH77016	Soybean	nucleus	30.38	27.47
KRH05665	Soybean	nucleus	23.6	26.94
VIT_18s0001g10270.t01	Wine grape	nucleus	29.2	26.83
PGSC0003DMT400010253	Potato	nucleus	29.5	26.6
CDY22448	Canola	nucleus, plastid	27.43	26.42
Solyc02g093280.2.1	Tomato	nucleus	29.2	26.19
KRH15381	Soybean	nucleus	22.71	25.93
CDX75629	Canola	nucleus	26.25	25.72
Bra011740.1-P	Field mustard	nucleus, plastid	26.55	25.42
CDX69281	Canola	nucleus, plastid	25.96	25.21
AT4G36930.1	Thale cress	nucleus	27.73	25.2
Zm00001d002288_P002	Maize	nucleus	15.63	24.77
Zm00001d026317_P003	Maize	nucleus, plastid	14.75	21.1
Zm00001d034298_P001	Maize	nucleus	20.06	16.11
Zm00001d031044_P001	Maize	nucleus	18.88	16.04
GSMUA_Achr7P20810_001	Banana	nucleus	28.02	15.86
Zm00001d018967_P001	Maize	nucleus	13.27	15.79
Zm00001d013073_P002	Maize	nucleus	12.98	15.44
Zm00001d029898_P001	Maize	nucleus	21.53	14.9
Zm00001d018374_P001	Maize	nucleus	16.81	14.65
Zm00001d052038_P001	Maize	nucleus	13.86	14.07
Zm00001d020490_P001	Maize	nucleus	14.16	13.95
Zm00001d024783_P001	Maize	nucleus	20.65	13.86
Zm00001d013130_P001	Maize	nucleus	15.63	13.7
Zm00001d045107_P001	Maize	nucleus	13.27	13.55
Zm00001d033267_P001	Maize	nucleus	21.83	13.5
Zm00001d040536_P005	Maize	nucleus	21.53	12.87
Zm00001d005750_P002	Maize	mitochondrion	15.04	12.47
Zm00001d008205_P001	Maize	nucleus	23.3	12.38
Zm00001d000291_P001	Maize	nucleus	15.34	11.09
Zm00001d016873_P001	Maize	nucleus	15.34	10.63
Zm00001d045046_P001	Maize	nucleus	13.57	9.56
Zm00001d037098_P003	Maize	nucleus	13.86	9.02
Zm00001d029897_P001	Maize	nucleus	2.06	2.56

Protein Annotations

MapMan:15.5.32	Gene3D:4.10.280.10	UniProt:A0A1D6NUL6	ProteinID:AQL01838.1	ncoils:Coil	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638
PFAM:PF00010	PFscan:PS50888	PANTHER:PTHR12565	PANTHER:PTHR12565:SF297	SMART:SM00353	SUPFAM:SSF47459
UniParc:UPI0008430364	EnsemblPlantsGene:Zm00001d045212	EnsemblPlants:Zm00001d045212_P001	EnsemblPlants:Zm00001d045212_T001	InterPro:bHLH_dom	SEG:seg

Description

bHLH-transcription factor 125Transcription factor SPATULA

Coordinates

chr9:-:16243543..16247220

Molecular Weight (calculated)

36850.0 Da

IEP (calculated)

8.237

GRAVY (calculated)

-0.607

Length

339 amino acids

Sequence
(BLAST)

001: MNEQGLGGLG GGRGAVQGHG REAMALLQHQ QLQQQRRQLE EEDEVRRQMF GGVAAFPAAL GHGQQVDYGE DAGGLGDSDA GGSEPEPPPE RTRGGSGGGG
101: GKRSRAAEVH NLSEKRRRSK INEKMKALQS LIPNSNKTDK ASMLDEAIEY LKQLQLQVQM LSMRNGVYLN PPYLSGTIEP AQASQMFAAV GGGNITASSS
201: GAVMPPVNQS SGLQVFDPLN PPRDQPLSFV LPNVDKTIQE APFHLESSQF HPRPFRMPES SEMMLPGEVV AKHQLTSIQG RVSMPAKSDY EICATKCMTS
301: SGQLRKWQPM RTEGKMTQFS NPADSLARRL PLYFPLLLQ

Best Arabidopsis Sequence Match ( AT4G36930.1 )
(BLAST)

001: MISQREEREE KKQRVMGDKK LISSSSSSSV YDTRINHHLH HPPSSSDEIS QFLRHIFDRS SPLPSYYSPA TTTTTASLIG VHGSGDPHAD NSRSLVSHHP
101: PSDSVLMSKR VGDFSEVLIG GGSGSAAACF GFSGGGNNNN VQGNSSGTRV SSSSVGASGN ETDEYDCESE EGGEAVVDEA PSSKSGPSSR SSSKRCRAAE
201: VHNLSEKRRR SRINEKMKAL QSLIPNSNKT DKASMLDEAI EYLKQLQLQV QMLTMRNGIN LHPLCLPGTT LHPLQLSQIR PPEATNDPLL NHTNQFASTS
301: NAPEMINTVA SSYALEPSIR SHFGPFPLLT SPVEMSREGG LTHPRLNIGH SNANITGEQA LFDGQPDLKD RIT

Arabidopsis Description

SPTSPT [Source:UniProtKB/TrEMBL;Acc:A0A178UVX7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.