Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES15124 | Sorghum | nucleus | 86.72 | 77.7 |
| Zm00001d031781_P001 | Maize | nucleus | 75.93 | 72.91 |
| TraesCS7D01G263400.1 | Wheat | nucleus | 63.07 | 69.09 |
| TraesCS7A01G262600.1 | Wheat | nucleus | 62.66 | 68.64 |
| HORVU7Hr1G054880.1 | Barley | nucleus | 63.07 | 68.47 |
| TraesCS7B01G160500.1 | Wheat | nucleus | 62.66 | 68.33 |
| Solyc12g088790.1.1 | Tomato | nucleus | 32.37 | 64.46 |
| PGSC0003DMT400048857 | Potato | nucleus | 33.2 | 54.05 |
| Zm00001d020705_P001 | Maize | nucleus | 53.94 | 53.72 |
| Zm00001d005841_P001 | Maize | nucleus | 48.55 | 48.35 |
| GSMUA_Achr9P15380_001 | Banana | nucleus | 48.55 | 47.76 |
| Bra037128.1-P | Field mustard | cytoskeleton, cytosol, nucleus | 38.17 | 44.88 |
| CDY18636 | Canola | nucleus | 38.17 | 44.88 |
| CDX81342 | Canola | cytoskeleton, cytosol, nucleus | 38.17 | 44.44 |
| Bra036071.1-P | Field mustard | nucleus | 38.59 | 43.66 |
| CDY30593 | Canola | nucleus | 38.17 | 43.19 |
| CDX68583 | Canola | nucleus | 39.42 | 41.85 |
| CDX83121 | Canola | nucleus | 39.83 | 41.74 |
| Bra030002.1-P | Field mustard | nucleus | 39.83 | 41.74 |
| CDY12799 | Canola | nucleus | 37.34 | 41.28 |
| CDY43559 | Canola | nucleus | 39.42 | 41.13 |
| CDY01443 | Canola | nucleus | 37.34 | 41.1 |
| Bra012128.1-P | Field mustard | nucleus | 37.34 | 41.1 |
| KRH28464 | Soybean | nucleus | 41.08 | 40.91 |
| CDY17765 | Canola | nucleus | 38.17 | 40.71 |
| CDY63952 | Canola | nucleus | 39.0 | 40.69 |
| Bra036801.1-P | Field mustard | nucleus | 39.0 | 40.69 |
| AT3G50330.1 | Thale cress | nucleus | 39.0 | 40.69 |
| PGSC0003DMT400010344 | Potato | nucleus | 37.34 | 40.18 |
| AT5G67060.1 | Thale cress | nucleus | 39.83 | 39.83 |
| KRH77007 | Soybean | nucleus | 41.08 | 39.44 |
| KRH57944 | Soybean | nucleus | 36.93 | 35.04 |
| KRH04603 | Soybean | nucleus | 40.25 | 34.4 |
| Zm00001d049721_P001 | Maize | nucleus | 33.61 | 28.22 |
| Zm00001d042989_P001 | Maize | nucleus, plastid | 21.58 | 24.64 |
| Zm00001d042988_P001 | Maize | nucleus, plastid | 21.58 | 24.64 |
| Zm00001d035027_P001 | Maize | nucleus | 34.02 | 24.48 |
| Zm00001d038863_P001 | Maize | nucleus | 29.88 | 18.18 |
| Zm00001d043699_P001 | Maize | nucleus | 30.71 | 17.54 |
| Zm00001d011187_P001 | Maize | nucleus | 30.29 | 16.98 |
| Zm00001d048786_P001 | Maize | nucleus, plastid | 15.77 | 16.31 |
| Zm00001d044242_P001 | Maize | nucleus | 31.54 | 15.8 |
| Zm00001d021988_P001 | Maize | nucleus | 18.26 | 14.92 |
| Zm00001d017804_P001 | Maize | nucleus | 18.26 | 14.92 |
| Zm00001d041351_P001 | Maize | nucleus | 18.26 | 14.47 |
| Zm00001d006733_P001 | Maize | nucleus | 17.01 | 14.34 |
| Zm00001d008444_P001 | Maize | nucleus | 17.43 | 12.92 |
| Zm00001d028085_P001 | Maize | nucleus | 13.69 | 11.15 |
| Zm00001d048141_P001 | Maize | cytosol | 13.69 | 10.44 |
Protein Annotations
| EntrezGene:103653294 | MapMan:15.5.32 | Gene3D:4.10.280.10 | ProteinID:AIB04464.1 | ProteinID:AQK51779.1 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf |
| InterPro:IPR011598 | InterPro:IPR036638 | UniProt:K7UTQ7 | PFAM:PF00010 | PFscan:PS50888 | PANTHER:PTHR12565 |
| PANTHER:PTHR12565:SF74 | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI0002211CC2 | EnsemblPlantsGene:Zm00001d050016 | EnsemblPlants:Zm00001d050016_P001 |
| EnsemblPlants:Zm00001d050016_T001 | InterPro:bHLH_dom | SEG:seg | : | : | : |
Description
bHLH-transcription factor 113Putative HLH DNA-binding domain superfamily protein
Coordinates
chr4:+:59679062..59679787
Molecular Weight (calculated)
25988.9 Da
IEP (calculated)
8.505
GRAVY (calculated)
-0.446
Length
241 amino acids
Sequence
(BLAST)
(BLAST)
001: MDFDMLNSHP EAQLELMKAM LQLEQLTAFP LPDHGAMMMV PSTPPSPGMP QATTHHHYFS SVPHHMSAGA NGRGVYDDDH QYSQGTAAPC NGSARSSEYV
101: AHAQGPVAGG GNSGESTAAT SVGSSSSAMR EMIFRVAALQ PVNIDPEMVR PPKRRNVRIS TDPQSVAARM RRERISERIR ILQRLVPGGT KMDTASMLDE
201: AIHYVKFLKT QVQSLERAAA ASGRRPAAPA VADNGAMNGQ W
101: AHAQGPVAGG GNSGESTAAT SVGSSSSAMR EMIFRVAALQ PVNIDPEMVR PPKRRNVRIS TDPQSVAARM RRERISERIR ILQRLVPGGT KMDTASMLDE
201: AIHYVKFLKT QVQSLERAAA ASGRRPAAPA VADNGAMNGQ W
001: MEKLPEFCNP NSSFFSPDHN NTYPFLFNST HYQSDHSMTN EPGFRYGSGL LTNPSSISPN TAYSSVFLDK RNNSNNNNNG TNMAAMREMI FRIAVMQPIH
101: IDPEAVKPPK RRNVRISKDP QSVAARHRRE RISERIRILQ RLVPGGTKMD TASMLDEAIH YVKFLKKQVQ SLEEQAVVTG GGGGGGGRVL IGGGGMTAAS
201: GGGGGGGVVM KGCGTVGTHQ MVGNAQILR
101: IDPEAVKPPK RRNVRISKDP QSVAARHRRE RISERIRILQ RLVPGGTKMD TASMLDEAIH YVKFLKKQVQ SLEEQAVVTG GGGGGGGRVL IGGGGMTAAS
201: GGGGGGGVVM KGCGTVGTHQ MVGNAQILR
Arabidopsis Description
HEC1HEC1 [Source:UniProtKB/TrEMBL;Acc:A0A178UR10]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.