Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX68583 | Canola | nucleus | 87.88 | 89.43 |
| CDX83121 | Canola | nucleus | 87.45 | 87.83 |
| Bra030002.1-P | Field mustard | nucleus | 87.45 | 87.83 |
| CDY17765 | Canola | nucleus | 81.39 | 83.19 |
| Bra036071.1-P | Field mustard | nucleus | 76.19 | 82.63 |
| CDY30593 | Canola | nucleus | 75.32 | 81.69 |
| Solyc12g088790.1.1 | Tomato | nucleus | 36.8 | 70.25 |
| AT5G67060.1 | Thale cress | nucleus | 69.7 | 66.81 |
| PGSC0003DMT400048857 | Potato | nucleus | 36.8 | 57.43 |
| KRH28464 | Soybean | nucleus | 51.52 | 49.17 |
| KRH77007 | Soybean | nucleus | 50.22 | 46.22 |
| PGSC0003DMT400010344 | Potato | nucleus | 44.16 | 45.54 |
| TraesCS7D01G263400.1 | Wheat | nucleus | 41.99 | 44.09 |
| HORVU7Hr1G054880.1 | Barley | nucleus | 41.99 | 43.69 |
| TraesCS7A01G262600.1 | Wheat | nucleus | 41.56 | 43.64 |
| TraesCS7B01G160500.1 | Wheat | nucleus | 41.13 | 42.99 |
| KRH57944 | Soybean | nucleus | 47.19 | 42.91 |
| KRH04603 | Soybean | nucleus | 50.65 | 41.49 |
| Os09t0455300-01 | Rice | nucleus | 40.69 | 39.83 |
| Zm00001d050016_P001 | Maize | nucleus | 40.69 | 39.0 |
| TraesCS5A01G237500.1 | Wheat | nucleus | 39.39 | 38.72 |
| TraesCS5B01G235200.1 | Wheat | nucleus | 39.39 | 38.72 |
| TraesCS5D01G244000.1 | Wheat | nucleus | 39.39 | 38.72 |
| TraesCS6A01G142000.1 | Wheat | nucleus | 39.39 | 38.72 |
| HORVU5Hr1G068110.1 | Barley | nucleus | 39.83 | 38.66 |
| GSMUA_Achr9P15380_001 | Banana | nucleus | 40.69 | 38.37 |
| Zm00001d020705_P001 | Maize | nucleus | 39.39 | 37.6 |
| Zm00001d031781_P001 | Maize | nucleus | 39.83 | 36.65 |
| AT4G00120.1 | Thale cress | nucleus | 31.17 | 36.36 |
| EES15124 | Sorghum | nucleus | 41.56 | 35.69 |
| EER96848 | Sorghum | nucleus | 40.26 | 35.63 |
| Zm00001d005841_P001 | Maize | nucleus | 37.23 | 35.54 |
| AT5G09750.1 | Thale cress | nucleus | 32.9 | 33.93 |
| AT5G01305.1 | Thale cress | nucleus, plastid | 20.78 | 28.07 |
| AT3G21330.1 | Thale cress | nucleus | 31.17 | 19.3 |
| AT5G43175.1 | Thale cress | nucleus | 18.18 | 18.83 |
| AT1G27740.1 | Thale cress | nucleus | 18.18 | 16.28 |
| AT1G66470.1 | Thale cress | nucleus | 18.61 | 14.43 |
| AT5G37800.1 | Thale cress | nucleus | 18.18 | 13.68 |
| AT4G33880.1 | Thale cress | nucleus | 19.91 | 13.07 |
| AT2G14760.3 | Thale cress | nucleus | 17.75 | 12.02 |
Protein Annotations
| MapMan:15.5.32 | Gene3D:4.10.280.10 | EntrezGene:824195 | UniProt:A0A178VGG7 | ProteinID:AEE78653.1 | EMBL:AK175679 |
| EMBL:AK175912 | EMBL:AK176020 | ArrayExpress:AT3G50330 | EnsemblPlantsGene:AT3G50330 | RefSeq:AT3G50330 | TAIR:AT3G50330 |
| RefSeq:AT3G50330-TAIR-G | EnsemblPlants:AT3G50330.1 | TAIR:AT3G50330.1 | EMBL:BT010607 | ProteinID:CAB62312.1 | ncoils:Coil |
| GO:GO:0000003 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009653 | GO:GO:0009791 | GO:GO:0009908 | GO:GO:0009987 | GO:GO:0010500 | GO:GO:0046983 |
| GO:GO:0048462 | GO:GO:0080126 | Symbol:HEC2 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 |
| RefSeq:NP_190602.1 | ProteinID:OAP04844.1 | PFAM:PF00010 | PO:PO:0000030 | PO:PO:0007606 | PO:PO:0007615 |
| PO:PO:0009056 | PO:PO:0009073 | PO:PO:0020003 | PO:PO:0020102 | PO:PO:0025281 | PFscan:PS50888 |
| PANTHER:PTHR12565 | PANTHER:PTHR12565:SF74 | UniProt:Q9SND4 | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI00000A3C45 |
| InterPro:bHLH_dom | SEG:seg | : | : | : | : |
Description
HEC2Transcription factor HEC2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SND4]
Coordinates
chr3:-:18656955..18658377
Molecular Weight (calculated)
25686.1 Da
IEP (calculated)
10.043
GRAVY (calculated)
-0.546
Length
231 amino acids
Sequence
(BLAST)
(BLAST)
001: MDNSDILMNM MMQQMEKLPE HFSNSNPNPN PHNIMMLSES NTHPFFFNPT HSHLPFDQTM PHHQPGLNFR YAPSPSSSLP EKRGGCSDNA NMAAMREMIF
101: RIAVMQPIHI DPESVKPPKR KNVRISKDPQ SVAARHRRER ISERIRILQR LVPGGTKMDT ASMLDEAIHY VKFLKKQVQS LEEHAVVNGG GMTAVAGGAL
201: AGTVGGGYGG KGCGIMRSDH HQMLGNAQIL R
101: RIAVMQPIHI DPESVKPPKR KNVRISKDPQ SVAARHRRER ISERIRILQR LVPGGTKMDT ASMLDEAIHY VKFLKKQVQS LEEHAVVNGG GMTAVAGGAL
201: AGTVGGGYGG KGCGIMRSDH HQMLGNAQIL R
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.