Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU5Hr1G068110.1 | |
| HORVU6Hr1G088020.4 | |
| HORVU7Hr1G026560.2 | |
| HORVU7Hr1G054880.1 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G237500.1 | Wheat | nucleus | 93.7 | 94.89 |
| TraesCS5D01G244000.1 | Wheat | nucleus | 91.18 | 92.34 |
| TraesCS5B01G235200.1 | Wheat | nucleus | 90.76 | 91.91 |
| TraesCS6A01G142000.1 | Wheat | nucleus | 90.34 | 91.49 |
| Os09t0455300-01 | Rice | nucleus | 70.59 | 71.19 |
| EER96848 | Sorghum | nucleus | 71.85 | 65.52 |
| Solyc12g088790.1.1 | Tomato | nucleus | 31.09 | 61.16 |
| Zm00001d005841_P001 | Maize | nucleus | 59.66 | 58.68 |
| HORVU7Hr1G054880.1 | Barley | nucleus | 54.2 | 58.11 |
| PGSC0003DMT400048857 | Potato | nucleus | 34.45 | 55.41 |
| GSMUA_Achr9P15380_001 | Banana | nucleus | 50.84 | 49.39 |
| Bra037128.1-P | Field mustard | cytoskeleton, cytosol, nucleus | 39.5 | 45.85 |
| CDY18636 | Canola | nucleus | 39.08 | 45.37 |
| CDX81342 | Canola | cytoskeleton, cytosol, nucleus | 39.08 | 44.93 |
| Bra036071.1-P | Field mustard | nucleus | 38.24 | 42.72 |
| Bra012128.1-P | Field mustard | nucleus | 39.08 | 42.47 |
| CDY30593 | Canola | nucleus | 37.82 | 42.25 |
| CDY12799 | Canola | nucleus | 38.66 | 42.2 |
| CDY01443 | Canola | nucleus | 38.66 | 42.01 |
| HORVU1Hr1G043780.1 | Barley | mitochondrion, nucleus | 10.5 | 41.67 |
| Bra036801.1-P | Field mustard | nucleus | 39.92 | 41.13 |
| CDY43559 | Canola | nucleus | 39.92 | 41.13 |
| CDY63952 | Canola | nucleus | 39.92 | 41.13 |
| AT5G67060.1 | Thale cress | nucleus | 41.18 | 40.66 |
| AT3G50330.1 | Thale cress | nucleus | 38.66 | 39.83 |
| CDX68583 | Canola | nucleus | 37.82 | 39.65 |
| Bra030002.1-P | Field mustard | nucleus | 38.24 | 39.57 |
| CDX83121 | Canola | nucleus | 38.24 | 39.57 |
| CDY17765 | Canola | nucleus | 37.4 | 39.38 |
| KRH28464 | Soybean | nucleus | 39.92 | 39.26 |
| PGSC0003DMT400010344 | Potato | nucleus | 36.13 | 38.39 |
| KRH77007 | Soybean | nucleus | 40.34 | 38.25 |
| HORVU0Hr1G019640.1 | Barley | cytosol | 28.57 | 36.56 |
| KRH57944 | Soybean | nucleus | 36.13 | 33.86 |
| KRH04603 | Soybean | nucleus | 38.66 | 32.62 |
| HORVU7Hr1G077270.3 | Barley | cytosol | 34.03 | 23.89 |
| HORVU3Hr1G087710.1 | Barley | nucleus | 21.01 | 23.81 |
| HORVU3Hr1G066600.2 | Barley | nucleus | 29.83 | 17.53 |
| HORVU1Hr1G079450.1 | Barley | nucleus | 27.73 | 16.5 |
| HORVU3Hr1G048770.1 | Barley | plastid | 30.67 | 15.15 |
| HORVU2Hr1G035190.9 | Barley | nucleus | 17.65 | 14.05 |
| HORVU5Hr1G097520.1 | Barley | nucleus | 16.81 | 13.7 |
| HORVU5Hr1G018100.1 | Barley | cytosol, mitochondrion, nucleus | 17.65 | 13.46 |
| HORVU7Hr1G046580.1 | Barley | plasma membrane, vacuole | 18.49 | 13.29 |
| HORVU4Hr1G069820.2 | Barley | nucleus | 18.07 | 13.07 |
| HORVU6Hr1G069690.3 | Barley | cytosol | 9.24 | 6.53 |
Protein Annotations
| EMBL:AK369960 | EnsemblPlants:HORVU5Hr1G068110.1 | EnsemblPlantsGene:HORVU5Hr1G068110 | Gene3D:4.10.280.10 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom |
| PANTHER:PTHR12565 | PANTHER:PTHR12565:SF74 | PFAM:PF00010 | PFscan:PS50888 | SEG:seg | SMART:SM00353 |
| SUPFAM:SSF47459 | UniParc:UPI000200794E | UniProt:F2E1D9 | MapMan:15.5.32 | : | : |
Description
Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2E1D9]
Coordinates
chrchr5H:+:516301961..516303720
Molecular Weight (calculated)
25461.2 Da
IEP (calculated)
6.417
GRAVY (calculated)
-0.231
Length
238 amino acids
Sequence
(BLAST)
(BLAST)
001: MDFDLLMSSS PEAQLALMNT MLQLEQALND QSLMMAEASP PISPAQTPSH SLSPPPHVST ACAPTDAGYF YHQDMHAQAA AAGYADAGTG GVHQEYVVSP
101: GAVVFDGPTG APQGYSSSPS SSDAMREMIF HIAALQPVDI DPEAVRPPKR RNVRTSKDPQ SVAARLRRER ISERIRVLQR LVPGGTKMDT ASMLDEAIHY
201: VKFLKSQVQS LELAAAATGA AAHRAAAFAY PALQHAPW
101: GAVVFDGPTG APQGYSSSPS SSDAMREMIF HIAALQPVDI DPEAVRPPKR RNVRTSKDPQ SVAARLRRER ISERIRVLQR LVPGGTKMDT ASMLDEAIHY
201: VKFLKSQVQS LELAAAATGA AAHRAAAFAY PALQHAPW
001: MEKLPEFCNP NSSFFSPDHN NTYPFLFNST HYQSDHSMTN EPGFRYGSGL LTNPSSISPN TAYSSVFLDK RNNSNNNNNG TNMAAMREMI FRIAVMQPIH
101: IDPEAVKPPK RRNVRISKDP QSVAARHRRE RISERIRILQ RLVPGGTKMD TASMLDEAIH YVKFLKKQVQ SLEEQAVVTG GGGGGGGRVL IGGGGMTAAS
201: GGGGGGGVVM KGCGTVGTHQ MVGNAQILR
101: IDPEAVKPPK RRNVRISKDP QSVAARHRRE RISERIRILQ RLVPGGTKMD TASMLDEAIH YVKFLKKQVQ SLEEQAVVTG GGGGGGGRVL IGGGGMTAAS
201: GGGGGGGVVM KGCGTVGTHQ MVGNAQILR
Arabidopsis Description
HEC1HEC1 [Source:UniProtKB/TrEMBL;Acc:A0A178UR10]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.