Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU1Hr1G043780.1 | Barley | mitochondrion, nucleus | 5.04 | 28.33 |
| HORVU7Hr1G046580.1 | Barley | plasma membrane, vacuole | 17.21 | 17.52 |
| CDY15706 | Canola | nucleus | 8.9 | 14.15 |
| HORVU2Hr1G035190.9 | Barley | nucleus | 10.98 | 12.37 |
| TraesCS1A01G345200.1 | Wheat | nucleus | 6.82 | 12.37 |
| CDX90106 | Canola | nucleus | 7.72 | 12.21 |
| HORVU5Hr1G097520.1 | Barley | nucleus | 10.39 | 11.99 |
| HORVU3Hr1G087710.1 | Barley | nucleus | 7.42 | 11.9 |
| Bra030063.1-P | Field mustard | nucleus | 8.9 | 11.76 |
| CDY11802 | Canola | nucleus | 7.72 | 11.3 |
| TraesCS1B01G359000.1 | Wheat | nucleus | 6.23 | 11.29 |
| GSMUA_Achr6P07760_001 | Banana | nucleus | 9.5 | 11.15 |
| Bra032846.1-P | Field mustard | nucleus | 8.01 | 11.07 |
| CDX84906 | Canola | nucleus | 8.01 | 11.07 |
| AT5G43175.1 | Thale cress | nucleus | 7.12 | 10.76 |
| TraesCS1D01G347900.1 | Wheat | nucleus | 5.93 | 10.75 |
| CDY27630 | Canola | nucleus | 7.72 | 10.74 |
| HORVU5Hr1G018100.1 | Barley | cytosol, mitochondrion, nucleus | 9.79 | 10.58 |
| AT1G27740.1 | Thale cress | nucleus | 8.01 | 10.47 |
| HORVU7Hr1G054880.1 | Barley | nucleus | 6.82 | 10.36 |
| HORVU4Hr1G069820.2 | Barley | nucleus | 10.09 | 10.33 |
| CDY11768 | Canola | nucleus | 7.72 | 10.16 |
| Bra010921.1-P | Field mustard | nucleus | 7.72 | 10.16 |
| HORVU0Hr1G019640.1 | Barley | cytosol | 5.34 | 9.68 |
| HORVU5Hr1G068110.1 | Barley | nucleus | 6.53 | 9.24 |
| CDY03948 | Canola | cytosol | 3.26 | 7.59 |
| HORVU3Hr1G048770.1 | Barley | plastid | 10.39 | 7.26 |
| HORVU1Hr1G079450.1 | Barley | nucleus | 8.01 | 6.75 |
| HORVU3Hr1G066600.2 | Barley | nucleus | 7.72 | 6.42 |
| HORVU7Hr1G077270.3 | Barley | cytosol | 5.93 | 5.9 |
| CDY03946 | Canola | nucleus | 4.45 | 5.45 |
Protein Annotations
| EnsemblPlants:HORVU6Hr1G069690.3 | EnsemblPlantsGene:HORVU6Hr1G069690 | PANTHER:PTHR16223 | PANTHER:PTHR16223:SF19 | SEG:seg | UniParc:UPI000B47B152 |
| UniProt:A0A287UKE7 | MapMan:35.2 | : | : | : | : |
Description
No Description!
Coordinates
chrchr6H:-:484042784..484043796
Molecular Weight (calculated)
34731.2 Da
IEP (calculated)
7.356
GRAVY (calculated)
-0.437
Length
337 amino acids
Sequence
(BLAST)
(BLAST)
001: MALVREPMVM YDGGFDAEAS AFDALGYGGH DAPLGGVDAA ALFGGYAYAH DEPAGAASAY VPDSARWACA GPSVLAFDRA ARGHGGQVVA QEEADCDAWV
101: DAMDEDQHAG PASTIGFDPA TGCFSLMQSS GGARRPFGLL FPSTSNASTD TAAPARGSSK RSYAARVQDT EPRAAKKPCG ASRKTSKAKP AAATATSPKG
201: DPQSLAAKVN SEPKLQHFSL YCSSSLHSLG TWVDLNNLPP CHTEPAGEDQ RAAPDTAGAG AQRHQGRHGH HAREGHRLRQ VPAAASQSAG DGRVLAGARG
301: KGAGDLRCEG GARRHLVVAD GATQLNFARK EKTIIAC
101: DAMDEDQHAG PASTIGFDPA TGCFSLMQSS GGARRPFGLL FPSTSNASTD TAAPARGSSK RSYAARVQDT EPRAAKKPCG ASRKTSKAKP AAATATSPKG
201: DPQSLAAKVN SEPKLQHFSL YCSSSLHSLG TWVDLNNLPP CHTEPAGEDQ RAAPDTAGAG AQRHQGRHGH HAREGHRLRQ VPAAASQSAG DGRVLAGARG
301: KGAGDLRCEG GARRHLVVAD GATQLNFARK EKTIIAC
001: MSLINEHCNE RNYISTPNSS EDLSSPQNCG LDEGASASSS STINSDHQNN QGFVFYPSGE TIEDHNSLMD FNASSFFTFD NHRSLISPVT NGGAFPVVDG
101: NMSYSYDGWS HHQVDSISPR VIKTPNSFET TSSFGLTSNS MSKPATNHGN GDWLYSGSTI VNIGSRHEST SPKLAGNKRP FTGENTQLSK KPSSGTNGKI
201: KPKATTSPKD PQSLAAKNRR ERISERLKVL QELVPNGTKV DLVTMLEKAI GYVKFLQVQV KVLAADEFWP AQGGKAPDIS QVKEAIDAIL SSSQRDSNST
301: RETSIAE
101: NMSYSYDGWS HHQVDSISPR VIKTPNSFET TSSFGLTSNS MSKPATNHGN GDWLYSGSTI VNIGSRHEST SPKLAGNKRP FTGENTQLSK KPSSGTNGKI
201: KPKATTSPKD PQSLAAKNRR ERISERLKVL QELVPNGTKV DLVTMLEKAI GYVKFLQVQV KVLAADEFWP AQGGKAPDIS QVKEAIDAIL SSSQRDSNST
301: RETSIAE
Arabidopsis Description
BHLH86RSL1 [Source:UniProtKB/TrEMBL;Acc:A0A178UPA1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.