Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra010921.1-P | Field mustard | nucleus | 99.53 | 82.81 |
| CDY15706 | Canola | nucleus | 82.16 | 82.55 |
| CDY11768 | Canola | nucleus | 98.12 | 81.64 |
| CDY11802 | Canola | nucleus | 87.32 | 80.87 |
| CDX84906 | Canola | nucleus | 87.79 | 76.64 |
| CDY27630 | Canola | nucleus | 86.39 | 76.03 |
| AT1G27740.1 | Thale cress | nucleus | 92.02 | 75.97 |
| HORVU1Hr1G043780.1 | Barley | mitochondrion, nucleus | 17.37 | 61.67 |
| GSMUA_Achr4P23240_001 | Banana | nucleus | 34.74 | 50.68 |
| CDY03948 | Canola | cytosol | 33.33 | 48.97 |
| TraesCS1D01G347900.1 | Wheat | nucleus | 34.27 | 39.25 |
| TraesCS1B01G359000.1 | Wheat | nucleus | 33.8 | 38.71 |
| TraesCS1A01G345200.1 | Wheat | nucleus | 33.8 | 38.71 |
| CDY03946 | Canola | nucleus | 49.3 | 38.18 |
| OQU83893 | Sorghum | nucleus | 34.74 | 30.58 |
| TraesCS3A01G440600.1 | Wheat | nucleus | 36.15 | 30.32 |
| TraesCS3B01G474700.1 | Wheat | nucleus | 35.68 | 29.92 |
| TraesCS3D01G433200.1 | Wheat | nucleus | 35.68 | 29.8 |
| EER93400 | Sorghum | nucleus | 40.85 | 29.79 |
| GSMUA_Achr9P09600_001 | Banana | nucleus | 38.03 | 29.35 |
| Zm00001d048786_P001 | Maize | nucleus, plastid | 31.92 | 29.18 |
| GSMUA_Achr6P07760_001 | Banana | nucleus | 38.97 | 28.92 |
| TraesCS5B01G406100.1 | Wheat | nucleus | 36.62 | 28.36 |
| TraesCS5A01G401300.1 | Wheat | nucleus | 37.09 | 27.34 |
| TraesCS5D01G411600.1 | Wheat | nucleus | 37.56 | 26.67 |
| CDX81461 | Canola | nucleus | 43.19 | 26.59 |
| CDY37221 | Canola | nucleus | 43.19 | 26.59 |
| CDX72435 | Canola | nucleus | 43.19 | 26.29 |
| CDY28328 | Canola | nucleus | 43.66 | 26.12 |
| CDX75386 | Canola | nucleus | 42.25 | 25.94 |
| CDX69011 | Canola | nucleus | 42.25 | 25.94 |
| CDY49379 | Canola | nucleus | 42.25 | 25.71 |
| HORVU5Hr1G097520.1 | Barley | nucleus | 35.21 | 25.68 |
| Os11t0634700-00 | Rice | extracellular | 38.5 | 22.84 |
| CDY18636 | Canola | nucleus | 19.72 | 20.49 |
| CDY30593 | Canola | nucleus | 20.19 | 20.19 |
| CDY66929 | Canola | nucleus, plastid | 16.43 | 19.77 |
| CDY55900 | Canola | nucleus, plastid | 16.43 | 19.77 |
| CDX81342 | Canola | cytoskeleton, cytosol, nucleus | 18.78 | 19.32 |
| CDY01443 | Canola | nucleus | 19.72 | 19.18 |
| CDY17765 | Canola | nucleus | 20.19 | 19.03 |
| CDY12799 | Canola | nucleus | 19.25 | 18.81 |
| CDX83121 | Canola | nucleus | 20.19 | 18.7 |
| CDY48431 | Canola | nucleus | 28.17 | 18.69 |
| CDY11694 | Canola | nucleus | 25.35 | 18.62 |
| CDX68049 | Canola | nucleus | 25.35 | 18.62 |
| CDX96145 | Canola | nucleus | 25.35 | 18.62 |
| CDY55674 | Canola | nucleus | 25.35 | 18.62 |
| CDY64847 | Canola | nucleus | 18.78 | 18.6 |
| CDX91916 | Canola | cytosol | 15.49 | 18.54 |
| CDX68583 | Canola | nucleus | 19.72 | 18.5 |
| CDX85799 | Canola | nucleus | 18.31 | 18.22 |
| CDY61813 | Canola | nucleus | 25.35 | 17.7 |
| CDY58387 | Canola | nucleus | 25.35 | 17.59 |
| CDX74329 | Canola | cytosol | 15.02 | 17.58 |
| CDY63952 | Canola | nucleus | 18.78 | 17.32 |
| CDY43559 | Canola | nucleus | 18.78 | 17.32 |
| CDY21597 | Canola | nucleus | 16.9 | 16.14 |
| CDY51449 | Canola | nucleus | 17.84 | 11.45 |
| CDY62045 | Canola | nucleus | 17.84 | 11.34 |
| CDY48884 | Canola | nucleus | 17.84 | 11.34 |
| CDY32423 | Canola | nucleus | 17.37 | 11.21 |
| HORVU6Hr1G069690.3 | Barley | cytosol | 12.21 | 7.72 |
Protein Annotations
| EnsemblPlants:CDX90106 | EnsemblPlantsGene:GSBRNA2T00150623001 | Gene3D:4.10.280.10 | GO:A0A078DLG0 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom |
| PANTHER:PTHR16223 | PANTHER:PTHR16223:SF105 | PFAM:PF00010 | PFscan:PS50888 | ProteinID:CDX90106 | ProteinID:CDX90106.1 |
| SEG:seg | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI0004EE98DD | MapMan:15.5.32 | : |
Description
BnaA08g18780D
Coordinates
chrLK031862:+:112797..113870
Molecular Weight (calculated)
24249.5 Da
IEP (calculated)
7.025
GRAVY (calculated)
-0.794
Length
213 amino acids
Sequence
(BLAST)
(BLAST)
001: MDVFVDGELE SLLGMFNFDQ CSSSKEEKPQ DEMLSLSSLY NGHLHHHHQN NVLKLLNVEN PHNTNSNCDV TRQELVKAKK KQRVSQESNT ADESNTNWRD
101: GQSQSNSSDD EKASVTSVKG KTRATKGTAT DPQSLYARKR REKINERLKT LQNLVPNGTK VDISTMLEEA VHYVKFLQLQ IKLLSSDELW MYAPLAYNGL
201: DMGFHHNLLS RLM
101: GQSQSNSSDD EKASVTSVKG KTRATKGTAT DPQSLYARKR REKINERLKT LQNLVPNGTK VDISTMLEEA VHYVKFLQLQ IKLLSSDELW MYAPLAYNGL
201: DMGFHHNLLS RLM
001: MDVFVDGELE SLLGMFNFDQ CSSSKEERPR DELLGLSSLY NGHLHQHQHH NNVLSSDHHA FLLPDMFPFG AMPGGNLPAM LDSWDQSHHL QETSSLKRKL
101: LDVENLCKTN SNCDVTRQEL AKSKKKQRVS SESNTVDESN TNWVDGQSLS NSSDDEKASV TSVKGKTRAT KGTATDPQSL YARKRREKIN ERLKTLQNLV
201: PNGTKVDIST MLEEAVHYVK FLQLQIKLLS SDDLWMYAPL AYNGLDMGFH HNLLSRLM
101: LDVENLCKTN SNCDVTRQEL AKSKKKQRVS SESNTVDESN TNWVDGQSLS NSSDDEKASV TSVKGKTRAT KGTATDPQSL YARKRREKIN ERLKTLQNLV
201: PNGTKVDIST MLEEAVHYVK FLQLQIKLLS SDDLWMYAPL AYNGLDMGFH HNLLSRLM
Arabidopsis Description
BHLH54Transcription factor bHLH54 [Source:UniProtKB/Swiss-Prot;Acc:Q8LEG1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.