Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G433200.1 | Wheat | nucleus | 95.28 | 94.9 |
| TraesCS3B01G474700.1 | Wheat | nucleus | 94.88 | 94.88 |
| TraesCS1A01G345200.1 | Wheat | nucleus | 35.04 | 47.85 |
| Os11t0634700-00 | Rice | extracellular | 62.6 | 44.29 |
| OQU83893 | Sorghum | nucleus | 40.94 | 42.98 |
| Zm00001d048786_P001 | Maize | nucleus, plastid | 34.65 | 37.77 |
| CDX90106 | Canola | nucleus | 30.32 | 36.15 |
| CDY03948 | Canola | cytosol | 20.47 | 35.86 |
| CDY15706 | Canola | nucleus | 28.74 | 34.43 |
| GSMUA_Achr6P07760_001 | Banana | nucleus | 38.19 | 33.8 |
| AT1G27740.1 | Thale cress | nucleus | 32.68 | 32.17 |
| Bra010921.1-P | Field mustard | nucleus | 32.28 | 32.03 |
| CDY11768 | Canola | nucleus | 32.28 | 32.03 |
| CDY27630 | Canola | nucleus | 29.53 | 30.99 |
| AT5G43175.1 | Thale cress | nucleus | 27.17 | 30.94 |
| Bra032846.1-P | Field mustard | nucleus | 29.53 | 30.74 |
| CDX84906 | Canola | nucleus | 29.53 | 30.74 |
| TraesCS5A01G067600.1 | Wheat | nucleus | 35.04 | 30.69 |
| Bra030063.1-P | Field mustard | nucleus | 30.71 | 30.59 |
| CDY11802 | Canola | nucleus | 26.77 | 29.57 |
| TraesCS4A01G234500.1 | Wheat | nucleus | 35.83 | 29.17 |
| TraesCS5A01G401300.1 | Wheat | nucleus | 33.07 | 29.07 |
| TraesCS4A01G047700.1 | Wheat | nucleus | 37.01 | 28.57 |
| TraesCS2A01G194200.1 | Wheat | nucleus | 33.46 | 28.15 |
| TraesCS3A01G006300.1 | Wheat | cytosol, nucleus, plastid | 22.44 | 20.8 |
| TraesCS7A01G169700.1 | Wheat | cytosol | 13.78 | 19.55 |
| TraesCS6A01G276100.1 | Wheat | nucleus | 21.65 | 18.9 |
| TraesCS6A01G276200.1 | Wheat | cytosol, nucleus, plastid | 20.87 | 18.34 |
| TraesCS7A01G229900.1 | Wheat | nucleus | 20.47 | 18.25 |
| TraesCS7A01G262600.1 | Wheat | nucleus | 14.96 | 17.27 |
| TraesCS5A01G237500.1 | Wheat | nucleus | 15.35 | 16.6 |
| TraesCS6A01G142000.1 | Wheat | nucleus | 14.96 | 16.17 |
| TraesCS3A01G350600.1 | Wheat | nucleus | 12.99 | 15.57 |
| TraesCS7A01G323000.1 | Wheat | nucleus | 15.75 | 12.78 |
| TraesCS1A01G362800.1 | Wheat | nucleus | 16.54 | 10.63 |
| CDY03946 | Canola | nucleus | 11.42 | 10.55 |
| TraesCS3A01G252200.1 | Wheat | nucleus | 15.35 | 10.1 |
| TraesCS3A01G207300.2 | Wheat | extracellular | 18.11 | 9.85 |
Protein Annotations
| EnsemblPlants:TraesCS3A01G440600.1 | EnsemblPlantsGene:TraesCS3A01G440600 | Gene3D:4.10.280.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom | ncoils:Coil |
| PANTHER:PTHR16223 | PANTHER:PTHR16223:SF99 | PFAM:PF00010 | PFscan:PS50888 | SEG:seg | SMART:SM00353 |
| SUPFAM:SSF47459 | TIGR:cd00083 | MapMan:15.5.32 | : | : | : |
Description
No Description!
Coordinates
chr3A:+:683239399..683241535
Molecular Weight (calculated)
28204.0 Da
IEP (calculated)
5.159
GRAVY (calculated)
-0.544
Length
254 amino acids
Sequence
(BLAST)
(BLAST)
001: MEAKCAAIWS SVDGRSEESE MIAHLQSMFW SNSDAAVNLC SPNTSDNSCV TASTVHSNLF LPLDMESHAT TPMVNTGMDL CFDHRHQTVT GHKRTSHMDE
101: QIKRTSKKSR TVPSVSDAPC LSLADNETNG DTVNQSSSSC CSSEEDLIDA SEESFVPNQG DNSRGCKRPS KNLQSLCAKR RRERINEKLR ELQNLIPNGT
201: KVDISTMLEE AVQYVKFLQL QIKVLSSDET WMYAPLAYNG MDISLSLRIT TAQE
101: QIKRTSKKSR TVPSVSDAPC LSLADNETNG DTVNQSSSSC CSSEEDLIDA SEESFVPNQG DNSRGCKRPS KNLQSLCAKR RRERINEKLR ELQNLIPNGT
201: KVDISTMLEE AVQYVKFLQL QIKVLSSDET WMYAPLAYNG MDISLSLRIT TAQE
001: MEAMGEWSTG LGGIYTEEAD FMNQLLASYE QPCGGSSSET TATLTAYHHQ GSQWNGGFCF SQESSSYSGY CAAMPRQEED NNGMEDATIN TNLYLVGEET
101: SECDATEYSG KSLLPLETVA ENHDHSMLQP ENSLTTTTDE KMFNQCESSK KRTRATTTDK NKRANKARRS QKCVEMSGEN ENSGEEEYTE KAAGKRKTKP
201: LKPQKTCCSD DESNGGDTFL SKEDGEDSKA LNLNGKTRAS RGAATDPQSL YARKRRERIN ERLRILQHLV PNGTKVDIST MLEEAVQYVK FLQLQIKLLS
301: SDDLWMYAPI AYNGMDIGLD LKLNALTR
101: SECDATEYSG KSLLPLETVA ENHDHSMLQP ENSLTTTTDE KMFNQCESSK KRTRATTTDK NKRANKARRS QKCVEMSGEN ENSGEEEYTE KAAGKRKTKP
201: LKPQKTCCSD DESNGGDTFL SKEDGEDSKA LNLNGKTRAS RGAATDPQSL YARKRRERIN ERLRILQHLV PNGTKVDIST MLEEAVQYVK FLQLQIKLLS
301: SDDLWMYAPI AYNGMDIGLD LKLNALTR
Arabidopsis Description
Basic helix-loop-helix (BHLH) DNA-binding superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IGG9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.