Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7D01G230600.1 | Wheat | nucleus | 95.44 | 95.1 |
| TraesCS7B01G195800.1 | Wheat | nucleus | 91.93 | 89.73 |
| HORVU7Hr1G046580.1 | Barley | plasma membrane, vacuole | 88.77 | 76.44 |
| GSMUA_Achr3P01250_001 | Banana | cytosol, nucleus, plastid | 24.21 | 57.02 |
| TraesCS3A01G006300.1 | Wheat | cytosol, nucleus, plastid | 36.84 | 38.32 |
| TraesCS6A01G276200.1 | Wheat | cytosol, nucleus, plastid | 37.89 | 37.37 |
| TraesCS6A01G276100.1 | Wheat | nucleus | 37.54 | 36.77 |
| Os06t0496400-01 | Rice | nucleus | 36.49 | 35.37 |
| Bra019708.1-P | Field mustard | nucleus | 33.68 | 31.27 |
| AT1G66470.1 | Thale cress | nucleus | 32.63 | 31.21 |
| CDY55674 | Canola | nucleus | 31.58 | 31.03 |
| CDY58387 | Canola | nucleus | 33.33 | 30.94 |
| GSMUA_Achr10P... | Banana | nucleus | 32.28 | 30.87 |
| CDY61813 | Canola | nucleus | 32.98 | 30.82 |
| CDY11694 | Canola | nucleus | 31.23 | 30.69 |
| CDX68049 | Canola | nucleus | 31.23 | 30.69 |
| CDX96145 | Canola | nucleus | 31.23 | 30.69 |
| GSMUA_Achr2P22860_001 | Banana | nucleus | 34.04 | 30.12 |
| KRH15121 | Soybean | nucleus | 30.18 | 29.35 |
| PGSC0003DMT400078776 | Potato | nucleus | 32.63 | 29.34 |
| VIT_14s0006g01470.t01 | Wine grape | nucleus | 35.44 | 29.11 |
| Solyc02g091440.1.1 | Tomato | nucleus | 32.28 | 29.02 |
| KRH73015 | Soybean | nucleus | 29.82 | 28.81 |
| AT5G37800.1 | Thale cress | nucleus | 30.88 | 28.66 |
| GSMUA_Achr6P09370_001 | Banana | nucleus | 33.68 | 28.32 |
| KRG97923 | Soybean | nucleus | 33.33 | 28.02 |
| KRH30960 | Soybean | nucleus | 32.63 | 27.43 |
| Bra004169.1-P | Field mustard | nucleus | 25.26 | 26.87 |
| TraesCS1A01G345200.1 | Wheat | nucleus | 15.09 | 23.12 |
| TraesCS3A01G440600.1 | Wheat | nucleus | 18.25 | 20.47 |
| TraesCS5A01G401300.1 | Wheat | nucleus | 19.65 | 19.38 |
| TraesCS5A01G067600.1 | Wheat | nucleus | 19.3 | 18.97 |
| TraesCS2A01G194200.1 | Wheat | nucleus | 19.3 | 18.21 |
| TraesCS3A01G350600.1 | Wheat | nucleus | 12.98 | 17.45 |
| TraesCS5A01G237500.1 | Wheat | nucleus | 14.39 | 17.45 |
| TraesCS6A01G142000.1 | Wheat | nucleus | 14.39 | 17.45 |
| TraesCS4A01G234500.1 | Wheat | nucleus | 18.6 | 16.99 |
| TraesCS7A01G262600.1 | Wheat | nucleus | 12.98 | 16.82 |
| TraesCS4A01G047700.1 | Wheat | nucleus | 18.95 | 16.41 |
| TraesCS7A01G169700.1 | Wheat | cytosol | 10.18 | 16.2 |
| TraesCS7A01G323000.1 | Wheat | nucleus | 12.63 | 11.5 |
| TraesCS3A01G252200.1 | Wheat | nucleus | 15.44 | 11.4 |
| TraesCS1A01G362800.1 | Wheat | nucleus | 14.39 | 10.38 |
| TraesCS3A01G207300.2 | Wheat | extracellular | 16.14 | 9.85 |
Protein Annotations
| EnsemblPlants:TraesCS7A01G229900.1 | EnsemblPlantsGene:TraesCS7A01G229900 | Gene3D:4.10.280.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom | PANTHER:PTHR16223 |
| PANTHER:PTHR16223:SF100 | PFAM:PF00010 | PFscan:PS50888 | SEG:seg | SMART:SM00353 | SUPFAM:SSF47459 |
| TIGR:cd00083 | MapMan:15.5.32 | : | : | : | : |
Description
No Description!
Coordinates
chr7A:-:200230313..200231372
Molecular Weight (calculated)
29953.8 Da
IEP (calculated)
5.598
GRAVY (calculated)
-0.399
Length
285 amino acids
Sequence
(BLAST)
(BLAST)
001: MALVGQPATF CYDGFIADGV PALMDAGGVG FGYGYDHHSH LLEEECLLGG HAHAWELPTG NLGAEAPGSV NAFGGHDLGW TSPAGRMSSS SSVLTFDSPG
101: EDNCAAAAWM DAADQLSYSP STATAPAGSF SFEGCGGNGR TAASPSHKRP RARAQAQQGS EQESTTLPKK QCGGDRKSAT KPTKTSAATS SAKDTQSDAA
201: KTRRERIGER LRVLQELVPN GSKVDMVTML DKAITYVKFM QLQLTVLETD AFWPAQGGEA PEISQVKAAL DAIILSSSQQ PRQWS
101: EDNCAAAAWM DAADQLSYSP STATAPAGSF SFEGCGGNGR TAASPSHKRP RARAQAQQGS EQESTTLPKK QCGGDRKSAT KPTKTSAATS SAKDTQSDAA
201: KTRRERIGER LRVLQELVPN GSKVDMVTML DKAITYVKFM QLQLTVLETD AFWPAQGGEA PEISQVKAAL DAIILSSSQQ PRQWS
001: MALVNDHPNE TNYLSKQNSS SSEDLSSPGL DQPDAAYAGG GGGGGSASSS STMNSDHQQH QGFVFYPSGE DHHNSLMDFN GSSFLNFDHH ESFPPPAISC
101: GGSSGGGGFS FLEGNNMSYG FTNWNHQHHM DIISPRSTET PQGQKDWLYS DSTVVTTGSR NESLSPKSAG NKRSHTGEST QPSKKLSSGV TGKTKPKPTT
201: SPKDPQSLAA KNRRERISER LKILQELVPN GTKVDLVTML EKAISYVKFL QVQVKVLATD EFWPAQGGKA PDISQVKDAI DAILSSSQRD RNSNLITN
101: GGSSGGGGFS FLEGNNMSYG FTNWNHQHHM DIISPRSTET PQGQKDWLYS DSTVVTTGSR NESLSPKSAG NKRSHTGEST QPSKKLSSGV TGKTKPKPTT
201: SPKDPQSLAA KNRRERISER LKILQELVPN GTKVDLVTML EKAISYVKFL QVQVKVLATD EFWPAQGGKA PDISQVKDAI DAILSSSQRD RNSNLITN
Arabidopsis Description
BHLH83RHD6 [Source:UniProtKB/TrEMBL;Acc:A0A178W430]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.