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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 4
  • cytosol 1
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, mitochondrion, nucleus
BaCelLo:nucleus
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
Bra000276.1-P
Bra004712.1-P
Bra016854.1-P
Bra017504.1-P
Bra022104.1-P

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G66470.1 Bra000276.1-P AT2G42870.1 21798944
AT1G66470.1 Bra004712.1-P AT2G42870.1 21798944
AT1G66470.1 Bra016854.1-P AT2G42870.1 21798944
AT1G66470.1 Bra017504.1-P AT5G47100.1 21798944
AT1G66470.1 Bra022104.1-P AT5G47100.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX96145 Canola nucleus 99.25 91.72
CDX68049 Canola nucleus 99.25 91.72
CDY11694 Canola nucleus 99.25 91.72
CDY55674 Canola nucleus 96.27 88.97
AT1G66470.1 Thale cress nucleus 83.58 75.17
Bra019708.1-P Field mustard nucleus 84.7 73.94
AT5G37800.1 Thale cress nucleus 67.91 59.28
GSMUA_Achr3P01250_001 Banana cytosol, nucleus, plastid 23.13 51.24
KRH73015 Soybean nucleus 38.43 34.92
KRH15121 Soybean nucleus 37.69 34.47
Solyc02g091440.1.1 Tomato nucleus 38.81 32.81
PGSC0003DMT400078776 Potato nucleus 38.06 32.18
VIT_14s0006g01470.t01 Wine grape nucleus 38.81 29.97
TraesCS3B01G007700.1 Wheat nucleus 30.6 29.93
TraesCS3A01G006300.1 Wheat cytosol, nucleus, plastid 30.6 29.93
TraesCS3B01G010400.1 Wheat nucleus 30.6 29.93
KRG97923 Soybean nucleus 37.69 29.79
Os02t0710300-01 Rice nucleus 33.21 29.67
TraesCS3D01G004300.1 Wheat cytosol, nucleus, plastid 30.22 29.45
KRH30960 Soybean nucleus 36.94 29.2
GSMUA_Achr10P... Banana nucleus 32.09 28.86
Zm00001d017804_P001 Maize nucleus 31.34 28.47
EES07381 Sorghum nucleus 32.46 28.43
GSMUA_Achr2P22860_001 Banana nucleus 33.96 28.26
TraesCS6B01G303600.1 Wheat cytosol, nucleus, plastid 29.1 27.46
TraesCS6D01G256600.1 Wheat nucleus 29.1 26.99
GSMUA_Achr6P09370_001 Banana nucleus 33.96 26.84
TraesCS6A01G276100.1 Wheat nucleus 29.1 26.8
TraesCS6B01G303500.1 Wheat nucleus 28.36 26.57
TraesCS6D01G256500.1 Wheat cytosol 27.99 26.5
TraesCS7B01G195800.1 Wheat nucleus 28.73 26.37
TraesCS6A01G276200.1 Wheat cytosol, nucleus, plastid 28.36 26.3
EES00435 Sorghum nucleus 28.36 26.21
TraesCS6D01G256300.1 Wheat nucleus 28.36 25.85
TraesCS7D01G230600.1 Wheat nucleus 27.24 25.52
TraesCS7A01G229900.1 Wheat nucleus 26.87 25.26
TraesCS6D01G256400.1 Wheat nucleus 25.75 25.09
Os01t0111500-01 Rice nucleus 27.24 24.75
Zm00001d008444_P001 Maize nucleus 29.48 24.31
HORVU7Hr1G046580.1 Barley plasma membrane, vacuole 27.99 22.66
Os06t0496400-01 Rice nucleus 23.88 21.77
Bra032846.1-P Field mustard nucleus 15.3 16.8
Bra010921.1-P Field mustard nucleus 16.04 16.8
Bra030063.1-P Field mustard nucleus 15.67 16.47
Bra037128.1-P Field mustard cytoskeleton, cytosol, nucleus 11.94 15.61
Bra028895.1-P Field mustard nucleus, plastid 9.7 14.69
Bra036071.1-P Field mustard nucleus 11.57 14.55
Bra030002.1-P Field mustard nucleus 11.94 13.91
Bra012128.1-P Field mustard nucleus 11.19 13.7
Bra036801.1-P Field mustard nucleus 11.57 13.42
Bra039819.1-P Field mustard nucleus 17.16 13.29
Bra034587.1-P Field mustard nucleus 17.16 13.29
Bra011476.1-P Field mustard nucleus 16.79 12.97
Bra028620.1-P Field mustard nucleus 10.07 12.62
Bra036969.1-P Field mustard nucleus 16.42 12.57
Bra031275.1-P Field mustard nucleus 13.06 10.54
Bra001826.1-P Field mustard nucleus 12.69 10.49
Bra000979.1-P Field mustard cytosol 7.09 10.27
Protein Annotations
MapMan:15.5.32EnsemblPlantsGene:Bra004169EnsemblPlants:Bra004169.1EnsemblPlants:Bra004169.1-PGO:GO:0003674GO:GO:0005488
GO:GO:0005515GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0005739
GO:GO:0007275GO:GO:0008150GO:GO:0009653GO:GO:0009987GO:GO:0016043GO:GO:0030154
GO:GO:0046983GO:GO:0048766InterPro:HLH_DNA-bd_sfInterPro:IPR011598InterPro:IPR036638UniProt:M4CIY5
PFscan:PS50888PANTHER:PTHR16223PANTHER:PTHR16223:SF19SUPFAM:SSF47459UniParc:UPI00025414FCInterPro:bHLH_dom
SEG:seg:::::
Description
AT1G66470 (E=5e-082) | basic helix-loop-helix (bHLH) family protein
Coordinates
chrA07:+:17185092..17186362
Molecular Weight (calculated)
29350.6 Da
IEP (calculated)
6.867
GRAVY (calculated)
-0.916
Length
268 amino acids
Sequence
(BLAST)
001: MALLNDHPNE SNYIAKQNSS SSEDLSSPEN YGLASSSSTM NSDHQQNHQG IVFYPSGESI ENHNSLLDFN GSSFLNFDNN NHHESFPHPT ISCGGGFSFL
101: EGNNMSYGFT NWSQHHMDII SPRPIETPGI NQGHKEWLYS DSTAVTTGSR DESLSPKSAG NKRSYTGESI QPPSKKPRSG ANGKAKPKPI TPPKDPQSLA
201: AKNRRERISE RLKILQELVP NGTKVLATDE FWPAQGGKAP DISQVRDAID AILSSSQRDK NSTPITNK
Best Arabidopsis Sequence Match ( AT1G66470.1 )
(BLAST)
001: MALVNDHPNE TNYLSKQNSS SSEDLSSPGL DQPDAAYAGG GGGGGSASSS STMNSDHQQH QGFVFYPSGE DHHNSLMDFN GSSFLNFDHH ESFPPPAISC
101: GGSSGGGGFS FLEGNNMSYG FTNWNHQHHM DIISPRSTET PQGQKDWLYS DSTVVTTGSR NESLSPKSAG NKRSHTGEST QPSKKLSSGV TGKTKPKPTT
201: SPKDPQSLAA KNRRERISER LKILQELVPN GTKVDLVTML EKAISYVKFL QVQVKVLATD EFWPAQGGKA PDISQVKDAI DAILSSSQRD RNSNLITN
Arabidopsis Description
BHLH83RHD6 [Source:UniProtKB/TrEMBL;Acc:A0A178W430]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.