Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os10t0564800-01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G66470.1 | Os10t0564800-01 | AT5G47100.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr3P01250_001 | Banana | cytosol, nucleus, plastid | 26.78 | 65.29 |
| EES00435 | Sorghum | nucleus | 55.93 | 56.9 |
| TraesCS3D01G004300.1 | Wheat | cytosol, nucleus, plastid | 47.8 | 51.27 |
| TraesCS3B01G010400.1 | Wheat | nucleus | 47.46 | 51.09 |
| TraesCS3B01G007700.1 | Wheat | nucleus | 47.12 | 50.73 |
| TraesCS3A01G006300.1 | Wheat | cytosol, nucleus, plastid | 46.78 | 50.37 |
| Zm00001d008444_P001 | Maize | nucleus | 49.15 | 44.62 |
| Os02t0710300-01 | Rice | nucleus | 43.05 | 42.33 |
| GSMUA_Achr10P... | Banana | nucleus | 35.59 | 35.23 |
| GSMUA_Achr2P22860_001 | Banana | nucleus | 37.63 | 34.47 |
| CDX68049 | Canola | nucleus | 31.86 | 32.41 |
| CDX96145 | Canola | nucleus | 31.86 | 32.41 |
| CDY11694 | Canola | nucleus | 31.86 | 32.41 |
| CDY55674 | Canola | nucleus | 31.53 | 32.07 |
| GSMUA_Achr6P09370_001 | Banana | nucleus | 36.61 | 31.86 |
| AT5G37800.1 | Thale cress | nucleus | 32.54 | 31.27 |
| AT1G66470.1 | Thale cress | nucleus | 31.53 | 31.21 |
| VIT_14s0006g01470.t01 | Wine grape | nucleus | 36.27 | 30.84 |
| KRH15121 | Soybean | nucleus | 30.51 | 30.72 |
| CDY61813 | Canola | nucleus | 30.85 | 29.84 |
| Bra019708.1-P | Field mustard | nucleus | 30.85 | 29.64 |
| CDY58387 | Canola | nucleus | 30.85 | 29.64 |
| KRH73015 | Soybean | nucleus | 29.49 | 29.49 |
| Solyc02g091440.1.1 | Tomato | nucleus | 31.19 | 29.02 |
| PGSC0003DMT400078776 | Potato | nucleus | 31.19 | 29.02 |
| Os06t0496400-01 | Rice | nucleus | 28.81 | 28.91 |
| KRG97923 | Soybean | nucleus | 33.22 | 28.91 |
| KRH30960 | Soybean | nucleus | 32.88 | 28.61 |
| Bra004169.1-P | Field mustard | nucleus | 24.75 | 27.24 |
| Os12t0589000-00 | Rice | nucleus | 21.02 | 20.39 |
| Os07t0588400-00 | Rice | nucleus | 20.34 | 20.34 |
| Os01t0831000-01 | Rice | nucleus | 13.22 | 18.14 |
| Os03t0205300-00 | Rice | nucleus | 20.68 | 17.89 |
| Os09t0455300-01 | Rice | nucleus | 13.56 | 16.95 |
| Os11t0634700-00 | Rice | extracellular | 17.63 | 14.48 |
| Os08t0108500-01 | Rice | nucleus | 13.56 | 13.07 |
| Os01t0707500-01 | Rice | nucleus | 14.58 | 10.94 |
| Os05t0541400-00 | Rice | nucleus | 14.92 | 10.58 |
| Os01t0566800-00 | Rice | nucleus | 14.92 | 9.44 |
Protein Annotations
| MapMan:15.5.32 | Gene3D:4.10.280.10 | EntrezGene:4326144 | EMBL:AK108587 | ProteinID:BAF03719.1 | ProteinID:BAS70021.1 |
| GO:GO:0001046 | GO:GO:0001228 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006366 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0045944 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | EMBL:HQ858858 | InterPro:IPR011598 | InterPro:IPR036638 |
| EnsemblPlantsGene:Os01g0111500 | EnsemblPlants:Os01t0111500-01 | PFAM:PF00010 | PFscan:PS50888 | PANTHER:PTHR16223 | PANTHER:PTHR16223:SF64 |
| UniProt:Q0JRA9 | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI0000DD8911 | RefSeq:XP_015643698.1 | InterPro:bHLH_dom |
| SEG:seg | : | : | : | : | : |
Description
basic helix-loop-helix protein 125ROOT HAIR DEFECTIVE-SIX LIKE (RSL) class I basic helix-loop-helix protein, bHLH transcription factor, Regulation of root hair development (Os01t0111500-01)
Coordinates
chr1:-:603643..605643
Molecular Weight (calculated)
30674.0 Da
IEP (calculated)
7.834
GRAVY (calculated)
-0.412
Length
295 amino acids
Sequence
(BLAST)
(BLAST)
001: MMAAQASSKR GMLLPREAVL YDDEPSMPLE ILGYHGNGVG GGGCVDADYY YSWSGSSSSS SSSVLSFDQA AVGGSGGGCA RQLAFHPGGD DDDCAMWMDA
101: AAGAMVENTS VVAGGGNNYC HRLQFHGGAA GFGLASPGSS VVDNGLEIHE SNVSKPPPPA AKKRACPSGE ARAAGKKQCR KGSKPNKAAS ASSPSPSPSP
201: SPSPNKEQPQ SAAAKVRRER ISERLKVLQD LVPNGTKVDL VTMLEKAINY VKFLQLQVKV LATDEFWPAQ GGKAPELSQV KDALDAILSS QHPNK
101: AAGAMVENTS VVAGGGNNYC HRLQFHGGAA GFGLASPGSS VVDNGLEIHE SNVSKPPPPA AKKRACPSGE ARAAGKKQCR KGSKPNKAAS ASSPSPSPSP
201: SPSPNKEQPQ SAAAKVRRER ISERLKVLQD LVPNGTKVDL VTMLEKAINY VKFLQLQVKV LATDEFWPAQ GGKAPELSQV KDALDAILSS QHPNK
001: MALVNDHPNE TNYLSKQNSS SSEDLSSPGL DQPDAAYAGG GGGGGSASSS STMNSDHQQH QGFVFYPSGE DHHNSLMDFN GSSFLNFDHH ESFPPPAISC
101: GGSSGGGGFS FLEGNNMSYG FTNWNHQHHM DIISPRSTET PQGQKDWLYS DSTVVTTGSR NESLSPKSAG NKRSHTGEST QPSKKLSSGV TGKTKPKPTT
201: SPKDPQSLAA KNRRERISER LKILQELVPN GTKVDLVTML EKAISYVKFL QVQVKVLATD EFWPAQGGKA PDISQVKDAI DAILSSSQRD RNSNLITN
101: GGSSGGGGFS FLEGNNMSYG FTNWNHQHHM DIISPRSTET PQGQKDWLYS DSTVVTTGSR NESLSPKSAG NKRSHTGEST QPSKKLSSGV TGKTKPKPTT
201: SPKDPQSLAA KNRRERISER LKILQELVPN GTKVDLVTML EKAISYVKFL QVQVKVLATD EFWPAQGGKA PDISQVKDAI DAILSSSQRD RNSNLITN
Arabidopsis Description
BHLH83RHD6 [Source:UniProtKB/TrEMBL;Acc:A0A178W430]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.