Factsheet for Solyc02g091440.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc06g060980.1.1
Solyc07g056360.1.1
Solyc08g007160.2.1
Solyc08g077770.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G66470.1	Solyc07g056360.1.1	AT2G42870.1	21798944
AT1G66470.1	Solyc06g060980.1.1	AT5G47100.1	21798944
AT1G66470.1	Solyc08g007160.2.1	AT5G47100.1	21798944
AT1G66470.1	Solyc08g077770.2.1	AT5G47100.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400078776	Potato	nucleus	96.21	96.21
GSMUA_Achr3P01250_001	Banana	cytosol, nucleus, plastid	26.5	69.42
VIT_14s0006g01470.t01	Wine grape	nucleus	52.05	47.55
CDY55674	Canola	nucleus	40.06	43.79
KRH15121	Soybean	nucleus	40.06	43.34
CDX68049	Canola	nucleus	39.43	43.1
CDX96145	Canola	nucleus	39.43	43.1
CDY11694	Canola	nucleus	39.43	43.1
KRH73015	Soybean	nucleus	40.06	43.05
AT1G66470.1	Thale cress	nucleus	38.8	41.28
KRH30960	Soybean	nucleus	43.85	41.0
KRG97923	Soybean	nucleus	43.85	41.0
CDY58387	Canola	nucleus	39.12	40.39
CDY61813	Canola	nucleus	38.8	40.33
Bra019708.1-P	Field mustard	nucleus	38.49	39.74
TraesCS3A01G006300.1	Wheat	cytosol, nucleus, plastid	34.07	39.42
TraesCS3B01G007700.1	Wheat	nucleus	33.75	39.05
TraesCS3B01G010400.1	Wheat	nucleus	33.75	39.05
Bra004169.1-P	Field mustard	nucleus	32.81	38.81
AT5G37800.1	Thale cress	nucleus	37.54	38.76
TraesCS3D01G004300.1	Wheat	cytosol, nucleus, plastid	33.12	38.18
GSMUA_Achr10P...	Banana	nucleus	35.33	37.58
GSMUA_Achr2P22860_001	Banana	nucleus	35.33	34.78
Os02t0710300-01	Rice	nucleus	32.49	34.33
EES00435	Sorghum	nucleus	31.23	34.14
Zm00001d017804_P001	Maize	nucleus	30.91	33.22
TraesCS6D01G256600.1	Wheat	nucleus	29.97	32.87
EES07381	Sorghum	nucleus	31.23	32.35
TraesCS7A01G229900.1	Wheat	nucleus	29.02	32.28
GSMUA_Achr6P09370_001	Banana	nucleus	34.38	32.15
TraesCS6B01G303600.1	Wheat	cytosol, nucleus, plastid	28.71	32.04
TraesCS7B01G195800.1	Wheat	nucleus	29.34	31.85
TraesCS6A01G276200.1	Wheat	cytosol, nucleus, plastid	29.02	31.83
TraesCS7D01G230600.1	Wheat	nucleus	28.71	31.82
Zm00001d008444_P001	Maize	nucleus	32.49	31.69
TraesCS6A01G276100.1	Wheat	nucleus	29.02	31.62
TraesCS6B01G303500.1	Wheat	nucleus	28.39	31.47
TraesCS6D01G256500.1	Wheat	cytosol	28.08	31.45
Os01t0111500-01	Rice	nucleus	29.02	31.19
TraesCS6D01G256300.1	Wheat	nucleus	28.71	30.95
TraesCS6D01G256400.1	Wheat	nucleus	25.55	29.45
HORVU7Hr1G046580.1	Barley	plasma membrane, vacuole	30.28	29.0
Solyc12g088790.1.1	Tomato	nucleus	11.04	28.93
Solyc09g005070.1.1	Tomato	nucleus	12.93	27.7
Solyc03g044460.1.1	Tomato	nucleus	12.3	26.71
Os06t0496400-01	Rice	nucleus	24.29	26.19
Solyc10g049780.1.1	Tomato	nucleus	17.67	20.59
Solyc01g107140.1.1	Tomato	nucleus	19.24	18.48
Solyc10g049720.1.1	Tomato	nucleus	17.35	18.46
Solyc02g090950.1.1	Tomato	nucleus	12.62	18.02
Solyc04g077960.1.1	Tomato	nucleus	19.87	17.75
Solyc04g078790.2.1	Tomato	nucleus	13.56	17.48
Solyc12g088380.1.1	Tomato	nucleus	13.56	15.52
Solyc11g005780.1.1	Tomato	nucleus	11.67	13.07
Solyc06g062460.2.1	Tomato	nucleus	15.14	12.28
Solyc03g121240.1.1	Tomato	nucleus	14.51	12.11

Protein Annotations

MapMan:15.5.32	Gene3D:4.10.280.10	GO:GO:0001046	GO:GO:0001228	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006366	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0045944	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598
InterPro:IPR036638	UniProt:K4BCU2	PFAM:PF00010	PFscan:PS50888	PANTHER:PTHR16223	PANTHER:PTHR16223:SF19
SMART:SM00353	SUPFAM:SSF47459	EnsemblPlantsGene:Solyc02g091440.1	EnsemblPlants:Solyc02g091440.1.1	UniParc:UPI000276799A	InterPro:bHLH_dom
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr2:-:52734176..52735874

Molecular Weight (calculated)

35139.8 Da

IEP (calculated)

6.520

GRAVY (calculated)

-0.773

Length

317 amino acids

Sequence
(BLAST)

001: MSMALAKEHV IMSDTKMGMV DNYDQYYEGE FGINDHSSPE LYGIHEEPPK SIFEECENSE KTSPKIAKNF ALSSSNSSLS SPSSSNSNAQ SVINFKGVYG
101: NFMHSANGSL LSFEQSERFC PNPRMISNIN QVEGSVWEDN NLHYQNCVTP KGSSNTSPRV INDNSNNNGI PFGWLNSEAN ASTTTHIDES RFNKRPSTEE
201: SMQTNKKQCS AGSKKGKPNN NNNNSIGTKD PQSIAAKNRR ERISERLKIL QELVPNGSKV DLVTMLEKAI GYVKFLQLQV KVLATDEFWP TQGGKAPDIS
301: QVKEAIDAIL ATQRDRN

Best Arabidopsis Sequence Match ( AT1G66470.1 )
(BLAST)

001: MALVNDHPNE TNYLSKQNSS SSEDLSSPGL DQPDAAYAGG GGGGGSASSS STMNSDHQQH QGFVFYPSGE DHHNSLMDFN GSSFLNFDHH ESFPPPAISC
101: GGSSGGGGFS FLEGNNMSYG FTNWNHQHHM DIISPRSTET PQGQKDWLYS DSTVVTTGSR NESLSPKSAG NKRSHTGEST QPSKKLSSGV TGKTKPKPTT
201: SPKDPQSLAA KNRRERISER LKILQELVPN GTKVDLVTML EKAISYVKFL QVQVKVLATD EFWPAQGGKA PDISQVKDAI DAILSSSQRD RNSNLITN

Arabidopsis Description

BHLH83RHD6 [Source:UniProtKB/TrEMBL;Acc:A0A178W430]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.