Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, vacuole
Predictor Summary:
Predictor Summary:
- mitochondrion 1
- vacuole 2
- extracellular 1
- endoplasmic reticulum 1
- plasma membrane 2
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU1Hr1G055300.1 | |
| HORVU4Hr1G090270.10 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G66470.1 | HORVU1Hr1G055300.1 | AT5G47100.1 | 21798944 |
| AT1G66470.1 | HORVU4Hr1G090270.10 | AT5G47100.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7B01G195800.1 | Wheat | nucleus | 78.55 | 89.04 |
| TraesCS7A01G229900.1 | Wheat | nucleus | 76.44 | 88.77 |
| TraesCS7D01G230600.1 | Wheat | nucleus | 76.13 | 88.11 |
| GSMUA_Achr3P01250_001 | Banana | cytosol, nucleus, plastid | 21.45 | 58.68 |
| HORVU1Hr1G043780.1 | Barley | mitochondrion, nucleus | 8.16 | 45.0 |
| Os06t0496400-01 | Rice | nucleus | 30.82 | 34.69 |
| GSMUA_Achr10P... | Banana | nucleus | 29.31 | 32.55 |
| CDY55674 | Canola | nucleus | 28.1 | 32.07 |
| GSMUA_Achr2P22860_001 | Banana | nucleus | 31.12 | 31.99 |
| AT1G66470.1 | Thale cress | nucleus | 28.7 | 31.88 |
| CDY11694 | Canola | nucleus | 27.79 | 31.72 |
| CDX96145 | Canola | nucleus | 27.79 | 31.72 |
| CDX68049 | Canola | nucleus | 27.79 | 31.72 |
| Bra019708.1-P | Field mustard | nucleus | 29.0 | 31.27 |
| CDY61813 | Canola | nucleus | 28.7 | 31.15 |
| CDY58387 | Canola | nucleus | 28.7 | 30.94 |
| PGSC0003DMT400078776 | Potato | nucleus | 29.31 | 30.6 |
| Solyc02g091440.1.1 | Tomato | nucleus | 29.0 | 30.28 |
| VIT_14s0006g01470.t01 | Wine grape | nucleus | 31.42 | 29.97 |
| KRH15121 | Soybean | nucleus | 26.28 | 29.69 |
| KRH73015 | Soybean | nucleus | 26.28 | 29.49 |
| AT5G37800.1 | Thale cress | nucleus | 26.89 | 28.99 |
| GSMUA_Achr6P09370_001 | Banana | nucleus | 29.31 | 28.61 |
| Bra004169.1-P | Field mustard | nucleus | 22.66 | 27.99 |
| KRH30960 | Soybean | nucleus | 28.4 | 27.73 |
| KRG97923 | Soybean | nucleus | 28.4 | 27.73 |
| HORVU5Hr1G068110.1 | Barley | nucleus | 13.29 | 18.49 |
| HORVU2Hr1G035190.9 | Barley | nucleus | 16.62 | 18.39 |
| HORVU5Hr1G097520.1 | Barley | nucleus | 16.01 | 18.15 |
| HORVU3Hr1G087710.1 | Barley | nucleus | 11.18 | 17.62 |
| HORVU6Hr1G069690.3 | Barley | cytosol | 17.52 | 17.21 |
| HORVU7Hr1G054880.1 | Barley | nucleus | 11.48 | 17.12 |
| HORVU4Hr1G069820.2 | Barley | nucleus | 16.92 | 17.02 |
| HORVU0Hr1G019640.1 | Barley | cytosol | 9.37 | 16.67 |
| HORVU5Hr1G018100.1 | Barley | cytosol, mitochondrion, nucleus | 14.8 | 15.71 |
| HORVU7Hr1G077270.3 | Barley | cytosol | 11.18 | 10.91 |
| HORVU3Hr1G066600.2 | Barley | nucleus | 13.29 | 10.86 |
| HORVU1Hr1G079450.1 | Barley | nucleus | 12.99 | 10.75 |
| HORVU3Hr1G048770.1 | Barley | plastid | 14.2 | 9.75 |
Protein Annotations
| MapMan:15.5.32 | Gene3D:4.10.280.10 | UniProt:A0A287WC68 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | EnsemblPlantsGene:HORVU7Hr1G046580 |
| EnsemblPlants:HORVU7Hr1G046580.1 | InterPro:IPR011598 | InterPro:IPR036638 | PFscan:PS50888 | PANTHER:PTHR16223 | PANTHER:PTHR16223:SF100 |
| SMART:SM00353 | SUPFAM:SSF47459 | TMHMM:TMhelix | UniParc:UPI000B47DADB | InterPro:bHLH_dom | SEG:seg |
Description
No Description!
Coordinates
chrchr7H:-:151945008..151946421
Molecular Weight (calculated)
35204.4 Da
IEP (calculated)
6.032
GRAVY (calculated)
-0.205
Length
331 amino acids
Sequence
(BLAST)
(BLAST)
001: LASLLFSCVA YRDITYTRVA ACLIHYNQSS LLTLLLLAIV IAAAMALVGQ PATFCYDGFV GDGAPAFMDV GFGYGYDHHS HLLEEECLLG SHAHGWELPT
101: GNLGAGAPGS INTFVGHDVG WTRPAGRMSS SSSVLAFDSQ GEDNCAAATW MDMDAVDQLS YSPSTAPAAA APAGSFSFEG CGGNDRTAAS PSHKRPRAHA
201: EAQRGTDQES TTPPKKQCGG DRKSAVKPTK TSATTSSTKD PQSDAAKTRR ERIGERLRVL QELVPNGSKV DMVTMLDKAI TYVKFMQLQL TVLETDAFWP
301: AQGGEAPEIS QVKAALDAII LSSSQQPRQW S
101: GNLGAGAPGS INTFVGHDVG WTRPAGRMSS SSSVLAFDSQ GEDNCAAATW MDMDAVDQLS YSPSTAPAAA APAGSFSFEG CGGNDRTAAS PSHKRPRAHA
201: EAQRGTDQES TTPPKKQCGG DRKSAVKPTK TSATTSSTKD PQSDAAKTRR ERIGERLRVL QELVPNGSKV DMVTMLDKAI TYVKFMQLQL TVLETDAFWP
301: AQGGEAPEIS QVKAALDAII LSSSQQPRQW S
001: MALVNDHPNE TNYLSKQNSS SSEDLSSPGL DQPDAAYAGG GGGGGSASSS STMNSDHQQH QGFVFYPSGE DHHNSLMDFN GSSFLNFDHH ESFPPPAISC
101: GGSSGGGGFS FLEGNNMSYG FTNWNHQHHM DIISPRSTET PQGQKDWLYS DSTVVTTGSR NESLSPKSAG NKRSHTGEST QPSKKLSSGV TGKTKPKPTT
201: SPKDPQSLAA KNRRERISER LKILQELVPN GTKVDLVTML EKAISYVKFL QVQVKVLATD EFWPAQGGKA PDISQVKDAI DAILSSSQRD RNSNLITN
101: GGSSGGGGFS FLEGNNMSYG FTNWNHQHHM DIISPRSTET PQGQKDWLYS DSTVVTTGSR NESLSPKSAG NKRSHTGEST QPSKKLSSGV TGKTKPKPTT
201: SPKDPQSLAA KNRRERISER LKILQELVPN GTKVDLVTML EKAISYVKFL QVQVKVLATD EFWPAQGGKA PDISQVKDAI DAILSSSQRD RNSNLITN
Arabidopsis Description
BHLH83RHD6 [Source:UniProtKB/TrEMBL;Acc:A0A178W430]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.