Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- plasma membrane 1
- mitochondrion 2
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G545500.2 | Wheat | cytosol | 96.77 | 97.67 |
| TraesCSU01G129500.1 | Wheat | cytosol, mitochondrion | 95.39 | 95.83 |
| TraesCS4B01G379200.1 | Wheat | cytosol | 85.25 | 91.13 |
| HORVU1Hr1G055300.1 | Barley | cytosol | 82.03 | 82.79 |
| GSMUA_AchrUn_... | Banana | cytosol | 78.34 | 79.81 |
| VIT_02s0236g00140.t01 | Wine grape | cytosol | 76.96 | 78.4 |
| GSMUA_Achr4P30070_001 | Banana | cytosol | 76.5 | 77.93 |
| Bra040169.1-P | Field mustard | cytosol | 74.19 | 75.59 |
| CDY38412 | Canola | cytosol | 74.19 | 75.59 |
| Bra012655.1-P | Field mustard | cytosol | 73.73 | 75.12 |
| CDX78784 | Canola | cytosol | 73.73 | 75.12 |
| CDX90465 | Canola | cytosol | 73.73 | 75.12 |
| GSMUA_Achr4P26350_001 | Banana | cytosol | 73.73 | 75.12 |
| AT5G47100.1 | Thale cress | cytosol | 73.27 | 74.65 |
| PGSC0003DMT400068352 | Potato | cytosol | 73.73 | 74.42 |
| CDY09616 | Canola | cytosol | 72.81 | 74.18 |
| CDY69850 | Canola | cytosol | 72.35 | 73.71 |
| CDY28977 | Canola | cytosol | 72.35 | 73.71 |
| CDY25987 | Canola | cytosol | 72.35 | 73.71 |
| Bra022104.1-P | Field mustard | cytosol | 72.35 | 73.71 |
| Bra017504.1-P | Field mustard | cytosol | 72.35 | 73.71 |
| Solyc08g077770.2.1 | Tomato | cytosol | 72.35 | 73.71 |
| PGSC0003DMT400011576 | Potato | cytosol | 71.89 | 73.24 |
| VIT_02s0236g00150.t01 | Wine grape | cytosol | 75.12 | 73.09 |
| CDY40580 | Canola | cytosol | 71.43 | 72.77 |
| KRH57533 | Soybean | mitochondrion | 70.05 | 71.36 |
| KRH28207 | Soybean | cytosol | 68.66 | 70.28 |
| Solyc06g060980.1.1 | Tomato | cytosol, mitochondrion | 68.66 | 69.3 |
| Solyc08g007160.2.1 | Tomato | cytosol | 68.2 | 68.84 |
| KRH04244 | Soybean | cytosol | 65.44 | 64.84 |
| HORVU5Hr1G016320.1 | Barley | cytosol | 63.59 | 61.33 |
| HORVU4Hr1G011670.1 | Barley | vacuole | 62.67 | 60.44 |
| AT4G17615.3 | Thale cress | cytosol | 68.66 | 59.13 |
| HORVU1Hr1G064470.1 | Barley | cytosol | 54.84 | 55.87 |
| PGSC0003DMT400052805 | Potato | cytosol | 63.13 | 52.49 |
| HORVU5Hr1G040030.6 | Barley | cytosol | 54.38 | 51.98 |
| HORVU1Hr1G080790.11 | Barley | cytosol | 46.08 | 51.28 |
| HORVU1Hr1G080820.4 | Barley | cytosol, nucleus, plastid | 47.47 | 40.71 |
| HORVU1Hr1G080780.4 | Barley | golgi, nucleus | 53.46 | 24.84 |
Protein Annotations
| EMBL:AK376412 | EnsemblPlants:HORVU4Hr1G090270.10 | EnsemblPlantsGene:HORVU4Hr1G090270 | Gene3D:1.10.238.10 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005509 | InterPro:EF-hand-dom_pair | InterPro:EF_Hand_1_Ca_BS | InterPro:EF_hand_dom | InterPro:IPR002048 | PANTHER:PTHR23056 |
| PANTHER:PTHR23056:SF41 | PFAM:PF13499 | PFscan:PS50222 | PRINTS:PR00450 | ScanProsite:PS00018 | SEG:seg |
| SMART:SM00054 | SUPFAM:SSF47473 | UniParc:UPI000200914E | UniProt:F2EJT5 | MapMan:35.1 | : |
Description
Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2EJT5]
Coordinates
chrchr4H:+:644832787..644837545
Molecular Weight (calculated)
24869.7 Da
IEP (calculated)
4.491
GRAVY (calculated)
-0.208
Length
217 amino acids
Sequence
(BLAST)
(BLAST)
001: MGCFHSTARA RARRRYPGYE DDPMQLAAET AFSVSEVEAL FELFKTISGS VIDDGLINKE EFQLALFKSK MDNIFANRIF DLFDVKKRGA IDFADFVQAL
101: NVFHPSIPME EKIDFSFKLY DMDNTGFIER KEVKQMLIAL LSESGMRLSD ETIESILDKT FSDADVNQDG KIDRAEWENF VSRNPSLMKI MTLPYLKDIT
201: TTFPSFVFNS KVDDIVT
101: NVFHPSIPME EKIDFSFKLY DMDNTGFIER KEVKQMLIAL LSESGMRLSD ETIESILDKT FSDADVNQDG KIDRAEWENF VSRNPSLMKI MTLPYLKDIT
201: TTFPSFVFNS KVDDIVT
001: MGCFHSKAAK EFRGHEDPVK LASETAFSVS EVEALFELFK SISSSVVDDG LINKEEFQLA LFKSRKRENI FANRIFDMFD VKRKGVIDFG DFVRSLNVFH
101: PNASLEDKID FTFRLYDMDC TGYIERQEVK QMLIALLCES EMKLADETIE IILDKTFEDA DVNQDGKIDK LEWSDFVNKN PSLLKIMTLP YLRDITTTFP
201: SFVFHSEVDE IAT
101: PNASLEDKID FTFRLYDMDC TGYIERQEVK QMLIALLCES EMKLADETIE IILDKTFEDA DVNQDGKIDK LEWSDFVNKN PSLLKIMTLP YLRDITTTFP
201: SFVFHSEVDE IAT
Arabidopsis Description
CBL1calcineurin B-like protein 1 [Source:TAIR;Acc:AT4G17615]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.