Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 2
- cytosol 2
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| mitochondrion:
28499913
|
msms PMID:
28499913
doi
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH04244 | Soybean | cytosol | 86.85 | 84.47 |
| Bra012655.1-P | Field mustard | cytosol | 80.28 | 80.28 |
| CDY09616 | Canola | cytosol | 80.28 | 80.28 |
| CDX90465 | Canola | cytosol | 80.28 | 80.28 |
| AT5G47100.1 | Thale cress | cytosol | 78.87 | 78.87 |
| CDY38412 | Canola | cytosol | 78.4 | 78.4 |
| Bra040169.1-P | Field mustard | cytosol | 78.4 | 78.4 |
| CDX78784 | Canola | cytosol | 77.93 | 77.93 |
| Bra022104.1-P | Field mustard | cytosol | 77.93 | 77.93 |
| CDY28977 | Canola | cytosol | 77.93 | 77.93 |
| VIT_02s0236g00140.t01 | Wine grape | cytosol | 77.93 | 77.93 |
| Bra017504.1-P | Field mustard | cytosol | 77.0 | 77.0 |
| CDY25987 | Canola | cytosol | 77.0 | 77.0 |
| CDY69850 | Canola | cytosol | 77.0 | 77.0 |
| CDY40580 | Canola | cytosol | 76.53 | 76.53 |
| GSMUA_AchrUn_... | Banana | cytosol | 75.59 | 75.59 |
| Solyc08g077770.2.1 | Tomato | cytosol | 75.59 | 75.59 |
| PGSC0003DMT400011576 | Potato | cytosol | 75.59 | 75.59 |
| PGSC0003DMT400068352 | Potato | cytosol | 76.06 | 75.35 |
| Os10t0564800-01 | Rice | plasma membrane | 74.18 | 74.18 |
| EER94470 | Sorghum | cytosol | 73.71 | 73.71 |
| GSMUA_Achr4P30070_001 | Banana | cytosol | 73.71 | 73.71 |
| Zm00001d029976_P004 | Maize | cytosol, mitochondrion | 73.24 | 73.24 |
| VIT_02s0236g00150.t01 | Wine grape | cytosol | 76.53 | 73.09 |
| GSMUA_Achr4P26350_001 | Banana | cytosol | 72.77 | 72.77 |
| KRH28207 | Soybean | cytosol | 72.3 | 72.64 |
| TraesCSU01G178500.1 | Wheat | cytosol | 72.3 | 71.63 |
| TraesCS1B01G229300.1 | Wheat | cytosol | 72.3 | 71.63 |
| TraesCS1A01G215800.1 | Wheat | cytosol | 72.3 | 71.63 |
| HORVU1Hr1G055300.1 | Barley | cytosol | 72.3 | 71.63 |
| TraesCSU01G129500.1 | Wheat | cytosol, mitochondrion | 71.83 | 70.83 |
| Solyc08g007160.2.1 | Tomato | cytosol | 71.36 | 70.7 |
| Solyc06g060980.1.1 | Tomato | cytosol, mitochondrion | 71.36 | 70.7 |
| HORVU4Hr1G090270.10 | Barley | cytosol | 71.36 | 70.05 |
| TraesCS5A01G545500.2 | Wheat | cytosol | 70.42 | 69.77 |
| TraesCS4B01G379200.1 | Wheat | cytosol | 65.26 | 68.47 |
| AT4G17615.3 | Thale cress | cytosol | 73.24 | 61.9 |
| Zm00001d000046_P001 | Maize | cytosol | 49.3 | 59.66 |
| KRH64445 | Soybean | cytosol | 61.97 | 59.19 |
| KRH01928 | Soybean | cytosol | 62.44 | 58.85 |
| KRH51220 | Soybean | endoplasmic reticulum | 62.44 | 58.85 |
| KRH53498 | Soybean | cytosol | 61.03 | 58.3 |
| KRG98442 | Soybean | cytosol | 60.56 | 57.08 |
| KRH46425 | Soybean | endoplasmic reticulum | 60.56 | 57.08 |
| PGSC0003DMT400052805 | Potato | cytosol | 67.14 | 54.79 |
| KRH36643 | Soybean | cytosol | 56.81 | 53.54 |
| KRH60052 | Soybean | cytosol | 51.17 | 47.39 |
| KRH41326 | Soybean | cytosol | 50.7 | 45.96 |
| KRH05482 | Soybean | cytosol, plasma membrane, plastid | 51.17 | 42.25 |
| KRH47134 | Soybean | cytosol | 52.11 | 42.21 |
| KRH44162 | Soybean | cytosol, extracellular | 51.64 | 41.51 |
Protein Annotations
| Gene3D:1.10.238.10 | EntrezGene:100527380 | MapMan:35.1 | EMBL:ACUP02002855 | InterPro:EF-hand-dom_pair | InterPro:EF_Hand_1_Ca_BS |
| InterPro:EF_hand_dom | EnsemblPlantsGene:GLYMA_05G066800 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005509 | UniProt:I1K0X0 |
| InterPro:IPR002048 | EnsemblPlants:KRH57533 | ProteinID:KRH57533 | ProteinID:KRH57533.1 | PFAM:PF13499 | PRINTS:PR00450 |
| ScanProsite:PS00018 | PFscan:PS50222 | PANTHER:PTHR23056 | PANTHER:PTHR23056:SF41 | SMART:SM00054 | SUPFAM:SSF47473 |
| UniParc:UPI00023C57F4 | : | : | : | : | : |
Description
hypothetical protein
Coordinates
chr5:+:6731397..6740875
Molecular Weight (calculated)
24418.1 Da
IEP (calculated)
4.488
GRAVY (calculated)
-0.123
Length
213 amino acids
Sequence
(BLAST)
(BLAST)
001: MGCFHSKSAR QFPAQENTVN LAAETAFTVS EVEALFELFR SISSSVVDDG LISKEEFQLA IFKNKKKDNL FANRIFDLFD VKKKGVIDFE DFVRSLNVFH
101: PNASLEDKIA FSFRLYDLHN TGFIERPEVK QMLIALLFES DMKLADDVIE TILDKTFVEA DLNQDGKIDT EEWETFVKKN PSLLKIMTLP YLRDITTSFP
201: SFIFNSNVDE ITA
101: PNASLEDKIA FSFRLYDLHN TGFIERPEVK QMLIALLFES DMKLADDVIE TILDKTFVEA DLNQDGKIDT EEWETFVKKN PSLLKIMTLP YLRDITTSFP
201: SFIFNSNVDE ITA
001: MGCFHSTAAR EFPDHENPVK LASETAFSVS EVEALYELFK SISSSVVDDG LINKEEFQLA LFKNRKKENL FANRIFDLFD VKRKGVIDFG DFVRSLNVFH
101: PNASLEEKTD FTFRLYDMDC TGFIERQEVK QMLIALLCES EMKLADDTIE MILDQTFEDA DVDRDGKIDK TEWSNFVIKN PSLLKIMTLP YLRDITTTFP
201: SFVFNSEVDE IAT
101: PNASLEEKTD FTFRLYDMDC TGFIERQEVK QMLIALLCES EMKLADDTIE MILDQTFEDA DVDRDGKIDK TEWSNFVIKN PSLLKIMTLP YLRDITTTFP
201: SFVFNSEVDE IAT
Arabidopsis Description
CBL9Calcineurin B-like protein 9 [Source:UniProtKB/Swiss-Prot;Acc:Q9LTB8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.