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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum

Predictor Summary:
  • nucleus 1
  • cytosol 2
  • plasma membrane 3
  • extracellular 3
  • endoplasmic reticulum 2
  • vacuole 2
  • golgi 2
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum
Any Predictor:cytosol, nucleus, secretory
BaCelLo:nucleus
MultiLoc:cytosol
Plant-mPloc:plasma membrane
PProwler:secretory
TargetP:secretory
WoLF PSORT:extracellular
YLoc:cytosol
endoplasmic reticulum: 27224218
mitochondrion: 28499913
msms PMID: 28499913 doi
S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
msms PMID: 27224218 doi
X Wang, S Komatsu
Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
PPI

Inferred distinct locusB in Crop

locusBlocations
KRH03685
KRH20252

Inferred from Arabidopsis experimental PPI

Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH01928 Soybean cytosol 99.11 99.11
VIT_00s1569g00020.t01 Wine grape cytosol 79.65 97.83
KRH46425 Soybean endoplasmic reticulum 92.48 92.48
KRG98442 Soybean cytosol 92.04 92.04
KRH36643 Soybean cytosol 86.73 86.73
GSMUA_AchrUn_... Banana cytosol 81.42 81.42
AT4G26560.1 Thale cress nucleus 60.18 63.55
KRH57533 Soybean mitochondrion 58.85 62.44
KRH28207 Soybean cytosol 56.64 60.38
KRH04244 Soybean cytosol 54.87 56.62
KRH53498 Soybean cytosol 53.54 54.26
KRH64445 Soybean cytosol 53.1 53.81
KRH60052 Soybean cytosol 52.21 51.3
KRH41326 Soybean cytosol 52.65 50.64
KRH47134 Soybean cytosol 55.31 47.53
KRH44162 Soybean cytosol, extracellular 54.42 46.42
KRH05482 Soybean cytosol, plasma membrane, plastid 52.21 45.74
Protein Annotations
Gene3D:1.10.238.10EntrezGene:100800868MapMan:35.1EMBL:ACUP02004730InterPro:EF-hand-dom_pairInterPro:EF_hand_dom
EnsemblPlantsGene:GLYMA_07G269200GO:GO:0003674GO:GO:0005488GO:GO:0005509InterPro:IPR002048UniProt:K7L409
EnsemblPlants:KRH51220ProteinID:KRH51220ProteinID:KRH51220.1PFAM:PF13499PFAM:PF13833PRINTS:PR00450
PFscan:PS50222PANTHER:PTHR23056PANTHER:PTHR23056:SF51SMART:SM00054SUPFAM:SSF47473UniParc:UPI0002339208
Description
hypothetical protein
Coordinates
chr7:+:44229950..44236543
Molecular Weight (calculated)
25778.6 Da
IEP (calculated)
4.390
GRAVY (calculated)
-0.247
Length
226 amino acids
Sequence
(BLAST)
001: MVQCLDGLKH LCAALINCCD ADSSKQPTGL ENPEVLARET VFSVSEIEAL YELFKKISSA VIDDGLINKE EFQLALFKTN KKESLFADRV FDLFDTKHNG
101: ILDFEEFARA LSVFHPNAPI DDKIEFSFQL YDLKQQGFIE RQEVKQMVVA TLAESGMNLS DDVIESIIDK TFEEADTKHD GKIDKEEWRN LVLQHPSLLK
201: NMTLQYLKDI TTTFPSFVFH SQVDDT
Best Arabidopsis Sequence Match ( AT4G16350.2 )
(BLAST)
001: MMMQCLDGLK HLALILLTCC DADPPKVRQN PKDVARGTVF TVNEIEALYE LFKSISKNGL IDKEQFQLVL FKMNTTRSLF ADRVFDLFDT KNTGILDFEA
101: FARSLSVFHP NAKFEDKIEF SFKLYDLNQQ GYIKRQEVKQ MVVRTLAESG MNLSDHVIES IIDKTFEEAD TKLDGKIDKE EWRSLVLRHP SLLQNMSLQH
201: LKDVTKTFPN FVFHTIVTDT PSELDG
Arabidopsis Description
CBL6Calcineurin B-like protein 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9C5P6]
SUBAcon: [extracellular,cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.