Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- plasma membrane 3
- extracellular 3
- endoplasmic reticulum 2
- vacuole 2
- golgi 2
Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
endoplasmic reticulum:
27224218
mitochondrion: 28499913 |
msms PMID:
28499913
doi
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
|
PPI
Inferred from Arabidopsis experimental PPI
Ath locusA | locusB | Ath locusB | Paper |
---|---|---|---|
AT4G26560.1 | KRH03685 | AT5G35410.1 | 11402167 |
AT4G26560.1 | KRH20252 | AT5G35410.1 | 11402167 |
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
KRH01928 | Soybean | cytosol | 99.11 | 99.11 |
VIT_00s1569g00020.t01 | Wine grape | cytosol | 79.65 | 97.83 |
KRH46425 | Soybean | endoplasmic reticulum | 92.48 | 92.48 |
KRG98442 | Soybean | cytosol | 92.04 | 92.04 |
KRH36643 | Soybean | cytosol | 86.73 | 86.73 |
GSMUA_AchrUn_... | Banana | cytosol | 81.42 | 81.42 |
AT4G26560.1 | Thale cress | nucleus | 60.18 | 63.55 |
KRH57533 | Soybean | mitochondrion | 58.85 | 62.44 |
KRH28207 | Soybean | cytosol | 56.64 | 60.38 |
KRH04244 | Soybean | cytosol | 54.87 | 56.62 |
KRH53498 | Soybean | cytosol | 53.54 | 54.26 |
KRH64445 | Soybean | cytosol | 53.1 | 53.81 |
KRH60052 | Soybean | cytosol | 52.21 | 51.3 |
KRH41326 | Soybean | cytosol | 52.65 | 50.64 |
KRH47134 | Soybean | cytosol | 55.31 | 47.53 |
KRH44162 | Soybean | cytosol, extracellular | 54.42 | 46.42 |
KRH05482 | Soybean | cytosol, plasma membrane, plastid | 52.21 | 45.74 |
Protein Annotations
Gene3D:1.10.238.10 | EntrezGene:100800868 | MapMan:35.1 | EMBL:ACUP02004730 | InterPro:EF-hand-dom_pair | InterPro:EF_hand_dom |
EnsemblPlantsGene:GLYMA_07G269200 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005509 | InterPro:IPR002048 | UniProt:K7L409 |
EnsemblPlants:KRH51220 | ProteinID:KRH51220 | ProteinID:KRH51220.1 | PFAM:PF13499 | PFAM:PF13833 | PRINTS:PR00450 |
PFscan:PS50222 | PANTHER:PTHR23056 | PANTHER:PTHR23056:SF51 | SMART:SM00054 | SUPFAM:SSF47473 | UniParc:UPI0002339208 |
Description
hypothetical protein
Coordinates
chr7:+:44229950..44236543
Molecular Weight (calculated)
25778.6 Da
IEP (calculated)
4.390
GRAVY (calculated)
-0.247
Length
226 amino acids
Sequence
(BLAST)
(BLAST)
001: MVQCLDGLKH LCAALINCCD ADSSKQPTGL ENPEVLARET VFSVSEIEAL YELFKKISSA VIDDGLINKE EFQLALFKTN KKESLFADRV FDLFDTKHNG
101: ILDFEEFARA LSVFHPNAPI DDKIEFSFQL YDLKQQGFIE RQEVKQMVVA TLAESGMNLS DDVIESIIDK TFEEADTKHD GKIDKEEWRN LVLQHPSLLK
201: NMTLQYLKDI TTTFPSFVFH SQVDDT
101: ILDFEEFARA LSVFHPNAPI DDKIEFSFQL YDLKQQGFIE RQEVKQMVVA TLAESGMNLS DDVIESIIDK TFEEADTKHD GKIDKEEWRN LVLQHPSLLK
201: NMTLQYLKDI TTTFPSFVFH SQVDDT
001: MMMQCLDGLK HLALILLTCC DADPPKVRQN PKDVARGTVF TVNEIEALYE LFKSISKNGL IDKEQFQLVL FKMNTTRSLF ADRVFDLFDT KNTGILDFEA
101: FARSLSVFHP NAKFEDKIEF SFKLYDLNQQ GYIKRQEVKQ MVVRTLAESG MNLSDHVIES IIDKTFEEAD TKLDGKIDKE EWRSLVLRHP SLLQNMSLQH
201: LKDVTKTFPN FVFHTIVTDT PSELDG
101: FARSLSVFHP NAKFEDKIEF SFKLYDLNQQ GYIKRQEVKQ MVVRTLAESG MNLSDHVIES IIDKTFEEAD TKLDGKIDKE EWRSLVLRHP SLLQNMSLQH
201: LKDVTKTFPN FVFHTIVTDT PSELDG
Arabidopsis Description
CBL6Calcineurin B-like protein 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9C5P6]
SUBAcon: [extracellular,cytosol]
SUBAcon: [extracellular,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.