Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- cytosol 4
- plasma membrane 3
- extracellular 2
- endoplasmic reticulum 2
- vacuole 2
- golgi 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
endoplasmic reticulum:
27224218
endoplasmic reticulum: 28499913 |
msms PMID:
28499913
doi
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRG98442 | Soybean | cytosol | 99.56 | 99.56 |
| Solyc07g065820.2.1 | Tomato | cytosol | 91.15 | 94.06 |
| GSMUA_Achr9P12840_001 | Banana | cytosol | 93.81 | 93.81 |
| PGSC0003DMT400057342 | Potato | cytosol, extracellular | 90.71 | 93.61 |
| KRH01928 | Soybean | cytosol | 92.92 | 92.92 |
| Os03t0626800-01 | Rice | cytosol | 92.48 | 92.89 |
| Solyc12g015870.1.1 | Tomato | cytosol | 92.04 | 92.86 |
| PGSC0003DMT400076653 | Potato | cytosol | 92.04 | 92.86 |
| KRH51220 | Soybean | endoplasmic reticulum | 92.48 | 92.48 |
| Zm00001d033295_P001 | Maize | cytosol | 90.71 | 91.11 |
| CDY42728 | Canola | cytosol | 90.71 | 90.71 |
| CDX92814 | Canola | cytosol | 90.71 | 90.71 |
| TraesCS4D01G068700.1 | Wheat | cytosol | 90.27 | 90.67 |
| AT5G55990.1 | Thale cress | cytosol, extracellular | 90.27 | 90.27 |
| CDY06547 | Canola | cytosol | 90.27 | 90.27 |
| CDY64981 | Canola | cytosol | 90.27 | 90.27 |
| Bra035598.1-P | Field mustard | cytosol | 90.27 | 90.27 |
| TraesCS4A01G245500.1 | Wheat | cytosol | 89.82 | 90.22 |
| CDX94315 | Canola | cytosol | 89.38 | 89.38 |
| CDX89324 | Canola | cytosol | 89.38 | 89.38 |
| PGSC0003DMT400037245 | Potato | cytosol | 87.61 | 89.19 |
| Bra026421.1-P | Field mustard | cytosol | 85.84 | 88.99 |
| CDY67196 | Canola | cytosol | 27.43 | 88.57 |
| HORVU5Hr1G016320.1 | Barley | cytosol | 88.05 | 88.44 |
| HORVU4Hr1G011670.1 | Barley | vacuole | 88.05 | 88.44 |
| TraesCS5D01G072100.1 | Wheat | cytosol | 88.05 | 88.44 |
| TraesCS5B01G071500.1 | Wheat | cytosol | 88.05 | 88.44 |
| TraesCS5A01G060600.1 | Wheat | cytosol | 88.05 | 88.44 |
| Os12t0597000-01 | Rice | plasma membrane, vacuole | 88.05 | 88.44 |
| AT4G26570.2 | Thale cress | cytosol | 89.82 | 88.26 |
| OQU79501 | Sorghum | cytosol | 87.17 | 87.56 |
| Zm00001d030955_P003 | Maize | cytosol | 86.28 | 86.67 |
| Bra028949.1-P | Field mustard | cytosol | 82.3 | 84.55 |
| CDY36774 | Canola | cytosol | 88.94 | 84.45 |
| CDY11963 | Canola | cytosol | 88.94 | 84.45 |
| KRH36643 | Soybean | cytosol | 83.19 | 83.19 |
| Zm00001d041392_P001 | Maize | cytosol, extracellular | 62.83 | 83.04 |
| TraesCS4B01G069900.1 | Wheat | cytosol | 83.19 | 72.31 |
| KRH57533 | Soybean | mitochondrion | 57.08 | 60.56 |
| KRH28207 | Soybean | cytosol | 56.19 | 59.91 |
| CDX89325 | Canola | plastid | 72.57 | 59.64 |
| Zm00001d041393_P001 | Maize | extracellular | 27.88 | 58.33 |
| KRH04244 | Soybean | cytosol | 54.42 | 56.16 |
| CDX94316 | Canola | plastid | 67.7 | 55.43 |
| Bra026422.1-P | Field mustard | cytosol, plastid | 61.06 | 55.2 |
| KRH64445 | Soybean | cytosol | 52.65 | 53.36 |
| KRH53498 | Soybean | cytosol | 52.65 | 53.36 |
| KRH60052 | Soybean | cytosol | 52.21 | 51.3 |
| KRH41326 | Soybean | cytosol | 52.65 | 50.64 |
| KRH47134 | Soybean | cytosol | 55.75 | 47.91 |
| KRH44162 | Soybean | cytosol, extracellular | 54.87 | 46.79 |
| KRH05482 | Soybean | cytosol, plasma membrane, plastid | 50.88 | 44.57 |
| VIT_00s0194g00040.t01 | Wine grape | cytosol | 18.58 | 10.37 |
Protein Annotations
| Gene3D:1.10.238.10 | EntrezGene:100820101 | MapMan:35.1 | EMBL:ACUP02005343 | EMBL:BT096566 | UniProt:C6TG22 |
| InterPro:EF-hand-dom_pair | InterPro:EF_hand_dom | EnsemblPlantsGene:GLYMA_08G332800 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005509 |
| InterPro:IPR002048 | EnsemblPlants:KRH46425 | ProteinID:KRH46425 | ProteinID:KRH46425.1 | ProteinID:KRH46426.1 | PFAM:PF13499 |
| PFAM:PF13833 | PRINTS:PR00450 | PFscan:PS50222 | PANTHER:PTHR23056 | PANTHER:PTHR23056:SF57 | SMART:SM00054 |
| SUPFAM:SSF47473 | UniParc:UPI0001B168E3 | : | : | : | : |
Description
hypothetical protein
Coordinates
chr8:+:44991891..44996540
Molecular Weight (calculated)
26039.1 Da
IEP (calculated)
4.448
GRAVY (calculated)
-0.234
Length
226 amino acids
Sequence
(BLAST)
(BLAST)
001: MLQCLEGLKP LFASILRCCD LDIYNQPRGL EDPELLARET VFSVSEIEAL YELFKKISSA VIDDGLINKE EFQLALFKTN KKESLFADRV FDLFDTKHNG
101: ILGFEEFARA LSVFHPNAPI DDKIEFSFQL YDLKQQGFIE RQEVKQMVVA TLAESGMNLS DDVIESIIDK TFEEADTKHD GKIDKEEWRN LVLRHPSLLK
201: NMTLQYLKDI TTTFPSFVFH SQVDDT
101: ILGFEEFARA LSVFHPNAPI DDKIEFSFQL YDLKQQGFIE RQEVKQMVVA TLAESGMNLS DDVIESIIDK TFEEADTKHD GKIDKEEWRN LVLRHPSLLK
201: NMTLQYLKDI TTTFPSFVFH SQVDDT
001: MSQCIDGFKH VCSSFFRCFD IDIYKQSGGL GDPELLARET VFSVSEIEAL YELFKKISSA VIDDGLINKE EFQLALFKTN KKESLFADRV FDLFDTKHNG
101: ILGFEEFARA LSVFHPNAPI EDKIDFSFQL YDLKQQGFIE RQEVKQMVVA TLAESGMNLS DEIIESIIDK TFEEADTKHD GRIDKEEWRT LVLRHPSLLK
201: NMTLQYLKDI TTTFPSFVFH SQVEDT
101: ILGFEEFARA LSVFHPNAPI EDKIDFSFQL YDLKQQGFIE RQEVKQMVVA TLAESGMNLS DEIIESIIDK TFEEADTKHD GRIDKEEWRT LVLRHPSLLK
201: NMTLQYLKDI TTTFPSFVFH SQVEDT
Arabidopsis Description
ATCBL3calcineurin B-like 3 [Source:TAIR;Acc:AT4G26570]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.