CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 3
peroxisome 1
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, peroxisome, plastid
BaCelLo:	cytosol
MultiLoc:	peroxisome
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH51422	Soybean	nucleus	96.23	95.86
VIT_03s0038g01440.t01	Wine grape	cytosol, peroxisome, plasma membrane	73.58	73.58
EES15308	Sorghum	endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, vacuole	66.79	70.52
TraesCS7A01G032500.1	Wheat	cytosol, peroxisome, plastid	62.26	69.62
Os06t0112200-01	Rice	cytosol	67.55	69.11
TraesCS4A01G457100.1	Wheat	cytosol, peroxisome, plastid	62.26	68.46
PGSC0003DMT400004137	Potato	cytosol	69.43	68.4
TraesCS7D01G029100.1	Wheat	cytosol	67.55	68.06
TraesCS3B01G479600.1	Wheat	cytosol	59.25	67.97
Zm00001d049823_P001	Maize	extracellular	63.77	67.33
TraesCS1B01G060900.1	Wheat	cytosol	68.3	67.29
Bra034657.1-P	Field mustard	peroxisome	65.28	65.04
Bra034660.1-P	Field mustard	peroxisome	65.28	65.04
Bra010725.1-P	Field mustard	peroxisome	64.91	64.91
KRH51427	Soybean	mitochondrion	67.55	64.62
CDY58815	Canola	peroxisome	64.53	64.29
AT4G34840.1	Thale cress	cytosol	61.51	64.17
AT4G38800.1	Thale cress	peroxisome	64.15	63.67
CDX90294	Canola	peroxisome	64.91	63.0
CDY17489	Canola	cytoskeleton, cytosol, peroxisome	63.02	62.78
CDY12103	Canola	peroxisome	64.91	62.77
Solyc01g111060.2.1	Tomato	plastid	70.19	60.39
KRH60733	Soybean	peroxisome, plasma membrane, plastid	46.04	58.1
TraesCS3D01G437600.1	Wheat	mitochondrion, plastid	57.74	57.95
HORVU7Hr1G004350.5	Barley	cytosol, peroxisome	67.55	57.19
Zm00001d031621_P003	Maize	cytosol, extracellular, peroxisome, plastid	63.4	53.33
GSMUA_AchrUn_...	Banana	golgi, vacuole	69.06	51.84
CDX72738	Canola	plastid	29.81	46.2

Protein Annotations

EntrezGene:100800253	Gene3D:3.40.50.1580	MapMan:4.1.2.2.6.4.1	EMBL:ACUP02002137	EnsemblPlantsGene:GLYMA_04G005900	GO:GO:0003674
GO:GO:0003824	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009116	GO:GO:0009987
UniProt:I1JSG1	EnsemblPlants:KRH60729	ProteinID:KRH60729	ProteinID:KRH60729.1	InterPro:Nucleoside_phosphorylase_d	InterPro:Nucleoside_phosphorylase_sf
PFAM:PF01048	PANTHER:PTHR21234	PANTHER:PTHR21234:SF34	SUPFAM:SSF53167	UniParc:UPI00023397ED	SEG:seg

Description

hypothetical protein

Coordinates

chr4:-:468859..472908

Molecular Weight (calculated)

28346.0 Da

IEP (calculated)

4.229

GRAVY (calculated)

0.125

Length

265 amino acids

Sequence
(BLAST)

001: MAALGDQSEE QAMAAQPKPQ NRPISNIVIV VAMQTEALPI VNRFQLTEDP DTPFPQGVPW VRYQGTYKDL NISLIWPGKD PTLGVDSVGT ISSALVTYAA
101: IQALQPDLII NAGTAGGFKA KGASIGDVFI VSDCAFHDRR IPIPVFDLYG VGLRKAFVAP NLVKELNLKV GKLSTGDSLD MTQQDESSII ANDATVKDME
201: GAAIAYVSDL LKVPAIFVKA VTDIIDGDKP TAEEFLQNLA AVTTALDLAV EQVINFINGK CESEL

Best Arabidopsis Sequence Match ( AT4G38800.1 )
(BLAST)

001: MAPHGDGLSD IEEPEVDAQS EILRPISSVV FVIAMQAEAL PLVNKFGLSE TTDSPLGKGL PWVLYHGVHK DLRINVVCPG RDAALGIDSV GTVPASLITF
101: ASIQALKPDI IINAGTCGGF KVKGANIGDV FLVSDVVFHD RRIPIPMFDL YGVGLRQAFS TPNLLKELNL KIGRLSTGDS LDMSTQDETL IIANDATLKD
201: MEGAAVAYVA DLLKIPVVFL KAVTDLVDGD KPTAEEFLQN LTVVTAALEG TATKVINFIN GRNLSDL

Arabidopsis Description

MTN1MTN1 [Source:UniProtKB/TrEMBL;Acc:A0A178UXV8]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.