Factsheet for Solyc01g111060.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 3
plastid 4
peroxisome 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400004137	Potato	cytosol	84.42	96.65
Os06t0112200-01	Rice	cytosol	60.71	72.2
EES15308	Sorghum	endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, vacuole	58.77	72.11
VIT_03s0038g01440.t01	Wine grape	cytosol, peroxisome, plasma membrane	62.01	72.08
KRH60729	Soybean	nucleus	60.39	70.19
KRH51422	Soybean	nucleus	60.06	69.55
AT4G34840.1	Thale cress	cytosol	56.82	68.9
TraesCS3B01G479600.1	Wheat	cytosol	51.62	68.83
Bra034660.1-P	Field mustard	peroxisome	59.42	68.8
Bra034657.1-P	Field mustard	peroxisome	59.42	68.8
TraesCS7A01G032500.1	Wheat	cytosol, peroxisome, plastid	52.92	68.78
TraesCS1B01G060900.1	Wheat	cytosol	60.06	68.77
Zm00001d049823_P001	Maize	extracellular	55.52	68.13
CDY58815	Canola	peroxisome	58.77	68.05
TraesCS7D01G029100.1	Wheat	cytosol	57.79	67.68
TraesCS4A01G457100.1	Wheat	cytosol, peroxisome, plastid	52.6	67.22
CDY17489	Canola	cytoskeleton, cytosol, peroxisome	57.47	66.54
AT4G38800.1	Thale cress	peroxisome	57.47	66.29
Bra010725.1-P	Field mustard	peroxisome	55.52	64.53
CDX90294	Canola	peroxisome	55.52	62.64
CDY12103	Canola	peroxisome	55.52	62.41
HORVU7Hr1G004350.5	Barley	cytosol, peroxisome	61.69	60.7
TraesCS3D01G437600.1	Wheat	mitochondrion, plastid	49.68	57.95
Zm00001d031621_P003	Maize	cytosol, extracellular, peroxisome, plastid	57.47	56.19
GSMUA_AchrUn_...	Banana	golgi, vacuole	63.64	55.52
KRH51427	Soybean	mitochondrion	47.4	52.71
KRH60733	Soybean	peroxisome, plasma membrane, plastid	35.06	51.43
CDX72738	Canola	plastid	24.03	43.27

Protein Annotations

EnsemblPlants:Solyc01g111060.2.1	EnsemblPlantsGene:Solyc01g111060.2	Gene3D:3.40.50.1580	GO:GO:0003674	GO:GO:0003824	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0009116	GO:GO:0009987	InterPro:Nucleoside_phosphorylase_d	InterPro:Nucleoside_phosphorylase_sf
PANTHER:PTHR21234	PANTHER:PTHR21234:SF34	PFAM:PF01048	SEG:seg	SUPFAM:SSF53167	UniParc:UPI000276918B
UniProt:K4B3W9	MapMan:4.1.2.2.6.4.1	:	:	:	:

Description

No Description!

Coordinates

chr1:+:97455746..97462024

Molecular Weight (calculated)

32752.5 Da

IEP (calculated)

5.019

GRAVY (calculated)

0.157

Length

308 amino acids

Sequence
(BLAST)

001: MGGLTTLSIK SSPIIDRTSY HFDSQFLNRK KFSKELPVKM APPHGDKSAE VKEEAAAAVS SVDNRPISTI LFIVAMQTEA LPLVKKFQLT EDLNSVFPKG
101: VPWVRFYGNY KGLTVNIVCP GKDPALGVDG VGTVSASLVT YASVQALKPD LIINAGTAGG FGAKGASIGD VFISSEVAFH DRRIPIPVFD IYGVGSRKAF
201: ATPNLLKELN LKVGKLSTGD SLDMSPMDEA SIIANDATIK DMEGAAVAYV ADLLKVPAIF VKAVTDIVDG DKPTPEEFLE NLVAVTAALD QTATQVVDYI
301: SGKCLVEL

Best Arabidopsis Sequence Match ( AT4G34840.1 )
(BLAST)

001: MEGVMGQVEK RPISTIVFIV AMQKEAQPLI NRLRLVEEVN TPFPKEVTWI MFKGMYKDLN INIVCPGKDS TLGVESVGTV PASLVTYASI LAIQPDLIIN
101: AGTAGGFKAK GACISDVYVV STVAFHDRRI PVPVLDIYGV GMRNTFPTPN LIKELNLKVG RLSTGDSMDM SPHDEESITA NDATVKDMEG AAVAYVADIF
201: KVPTILIKGV TDIVDGNRPT SEEFLENLAA VTAKLDESLT KVIDFISGKC LSDL

Arabidopsis Description

MTN25'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q7XA67]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.