CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 3
peroxisome 1
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH60729	Soybean	nucleus	95.86	96.23
VIT_03s0038g01440.t01	Wine grape	cytosol, peroxisome, plasma membrane	72.56	72.83
EES15308	Sorghum	endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, vacuole	67.29	71.31
TraesCS7A01G032500.1	Wheat	cytosol, peroxisome, plastid	62.41	70.04
Os06t0112200-01	Rice	cytosol	67.67	69.5
TraesCS4A01G457100.1	Wheat	cytosol, peroxisome, plastid	62.41	68.88
TraesCS7D01G029100.1	Wheat	cytosol	68.05	68.82
TraesCS3B01G479600.1	Wheat	cytosol	59.4	68.4
TraesCS1B01G060900.1	Wheat	cytosol	68.8	68.03
PGSC0003DMT400004137	Potato	cytosol	68.8	68.03
Zm00001d049823_P001	Maize	extracellular	63.53	67.33
Bra034657.1-P	Field mustard	peroxisome	65.04	65.04
Bra034660.1-P	Field mustard	peroxisome	65.04	65.04
CDY58815	Canola	peroxisome	64.29	64.29
AT4G34840.1	Thale cress	cytosol	61.28	64.17
KRH51427	Soybean	mitochondrion	66.17	63.54
Bra010725.1-P	Field mustard	peroxisome	63.16	63.4
AT4G38800.1	Thale cress	peroxisome	63.16	62.92
CDY17489	Canola	cytoskeleton, cytosol, peroxisome	62.78	62.78
CDX90294	Canola	peroxisome	63.16	61.54
CDY12103	Canola	peroxisome	63.16	61.31
Solyc01g111060.2.1	Tomato	plastid	69.55	60.06
TraesCS3D01G437600.1	Wheat	mitochondrion, plastid	57.89	58.33
HORVU7Hr1G004350.5	Barley	cytosol, peroxisome	68.42	58.15
KRH60733	Soybean	peroxisome, plasma membrane, plastid	45.86	58.1
Zm00001d031621_P003	Maize	cytosol, extracellular, peroxisome, plastid	63.91	53.97
GSMUA_AchrUn_...	Banana	golgi, vacuole	68.8	51.84
CDX72738	Canola	plastid	29.32	45.61

Protein Annotations

Gene3D:3.40.50.1580	MapMan:4.1.2.2.6.4.1	EMBL:ACUP02003373	EnsemblPlantsGene:GLYMA_06G005600	GO:GO:0003674	GO:GO:0003824
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009116	GO:GO:0009987	UniProt:I1K708
EnsemblPlants:KRH51422	ProteinID:KRH51422	ProteinID:KRH51422.1	InterPro:Nucleoside_phosphorylase_d	InterPro:Nucleoside_phosphorylase_sf	PFAM:PF01048
PANTHER:PTHR21234	PANTHER:PTHR21234:SF34	SUPFAM:SSF53167	UniParc:UPI000233944F	SEG:seg	:

Description

hypothetical protein

Coordinates

chr6:-:456039..459612

Molecular Weight (calculated)

28556.3 Da

IEP (calculated)

4.471

GRAVY (calculated)

0.096

Length

266 amino acids

Sequence
(BLAST)

001: MAALGEQSEE QAMAAQPKPQ NRRPISNIVI VVAMQTEALP IVNRFQLTED PHSPFPRGVP WVRYQGTYKD LNISLIWPGK DPTLGVDSVG TISSALVTYA
101: AIQALQPDLI INAGTAGGFK AKGASIGDVF IVSDCAFHDR RIPIPVFDLY GVGVRKTFEA PNLVKELNLK VGKLSTGDSL DMTQQDESSI IANDATVKDM
201: EGAAIAYVSD LLKVPAMFVK AVTDIIDGDK PTAEEFLQNL AAVTAALDLA VEQVINFING KCVSEL

Best Arabidopsis Sequence Match ( AT4G38800.1 )
(BLAST)

001: MAPHGDGLSD IEEPEVDAQS EILRPISSVV FVIAMQAEAL PLVNKFGLSE TTDSPLGKGL PWVLYHGVHK DLRINVVCPG RDAALGIDSV GTVPASLITF
101: ASIQALKPDI IINAGTCGGF KVKGANIGDV FLVSDVVFHD RRIPIPMFDL YGVGLRQAFS TPNLLKELNL KIGRLSTGDS LDMSTQDETL IIANDATLKD
201: MEGAAVAYVA DLLKIPVVFL KAVTDLVDGD KPTAEEFLQN LTVVTAALEG TATKVINFIN GRNLSDL

Arabidopsis Description

MTN1MTN1 [Source:UniProtKB/TrEMBL;Acc:A0A178UXV8]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.