Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- extracellular 3
- endoplasmic reticulum 3
- vacuole 3
- plasma membrane 4
- golgi 3
- cytosol 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5B01G071500.1 | Wheat | cytosol | 100.0 | 100.0 |
| TraesCS5A01G060600.1 | Wheat | cytosol | 100.0 | 100.0 |
| HORVU5Hr1G016320.1 | Barley | cytosol | 100.0 | 100.0 |
| Os12t0597000-01 | Rice | plasma membrane, vacuole | 94.22 | 94.22 |
| TraesCS4D01G068700.1 | Wheat | cytosol | 92.44 | 92.44 |
| OQU79501 | Sorghum | cytosol | 92.44 | 92.44 |
| Zm00001d030955_P003 | Maize | cytosol | 92.0 | 92.0 |
| Zm00001d041392_P001 | Maize | cytosol, extracellular | 68.0 | 89.47 |
| GSMUA_Achr9P12840_001 | Banana | cytosol | 89.78 | 89.38 |
| KRH46425 | Soybean | endoplasmic reticulum | 88.44 | 88.05 |
| Solyc07g065820.2.1 | Tomato | cytosol | 85.33 | 87.67 |
| KRG98442 | Soybean | cytosol | 88.0 | 87.61 |
| PGSC0003DMT400057342 | Potato | cytosol, extracellular | 84.89 | 87.21 |
| CDX92814 | Canola | cytosol | 87.56 | 87.17 |
| CDY42728 | Canola | cytosol | 87.56 | 87.17 |
| Solyc12g015870.1.1 | Tomato | cytosol | 86.22 | 86.61 |
| PGSC0003DMT400076653 | Potato | cytosol | 86.22 | 86.61 |
| PGSC0003DMT400037245 | Potato | cytosol | 85.33 | 86.49 |
| AT5G55990.1 | Thale cress | cytosol, extracellular | 85.78 | 85.4 |
| CDY06547 | Canola | cytosol | 85.78 | 85.4 |
| CDY64981 | Canola | cytosol | 85.78 | 85.4 |
| Bra035598.1-P | Field mustard | cytosol | 85.78 | 85.4 |
| AT4G26570.2 | Thale cress | cytosol | 87.11 | 85.22 |
| CDX89324 | Canola | cytosol | 84.89 | 84.51 |
| CDX94315 | Canola | cytosol | 84.89 | 84.51 |
| Bra026421.1-P | Field mustard | cytosol | 81.78 | 84.4 |
| CDY67196 | Canola | cytosol | 26.22 | 84.29 |
| CDY11963 | Canola | cytosol | 85.78 | 81.09 |
| CDY36774 | Canola | cytosol | 85.33 | 80.67 |
| TraesCS5D01G132500.2 | Wheat | cytosol | 80.89 | 80.53 |
| Bra028949.1-P | Field mustard | cytosol | 78.22 | 80.0 |
| CDX89325 | Canola | plastid | 68.89 | 56.36 |
| TraesCS1D01G261200.1 | Wheat | cytosol | 52.0 | 54.93 |
| TraesCS1D01G358400.1 | Wheat | mitochondrion | 51.56 | 53.21 |
| TraesCS1D01G358200.2 | Wheat | cytosol, plastid | 52.89 | 52.42 |
| CDX94316 | Canola | plastid | 64.0 | 52.17 |
| TraesCS1D01G346500.1 | Wheat | cytosol | 49.33 | 51.63 |
| TraesCS1D01G346400.1 | Wheat | cytosol | 49.33 | 51.63 |
| Bra026422.1-P | Field mustard | cytosol, plastid | 57.33 | 51.6 |
| TraesCS3D01G211300.1 | Wheat | cytosol | 59.56 | 46.53 |
| TraesCS4D01G162400.1 | Wheat | cytosol | 38.67 | 40.85 |
| VIT_00s0194g00040.t01 | Wine grape | cytosol | 18.22 | 10.12 |
Protein Annotations
| EnsemblPlants:TraesCS5D01G072100.1 | EnsemblPlantsGene:TraesCS5D01G072100 | Gene3D:1.10.238.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005509 |
| InterPro:EF-hand-dom_pair | InterPro:EF_hand_dom | InterPro:IPR002048 | PANTHER:PTHR23056 | PANTHER:PTHR23056:SF57 | PFAM:PF13499 |
| PFAM:PF13833 | PFscan:PS50222 | PRINTS:PR00450 | SMART:SM00054 | SUPFAM:SSF47473 | MapMan:35.1 |
Description
No Description!
Coordinates
chr5D:-:71887434..71891711
Molecular Weight (calculated)
25883.9 Da
IEP (calculated)
4.619
GRAVY (calculated)
-0.208
Length
225 amino acids
Sequence
(BLAST)
(BLAST)
001: MVQCLDGVKH LLAVLFKCCD LELKQPRGLE DPQVLARETV FSVSEVEALY ELFKKISSAV IDDGLINKEE FQLALFKTSK KESLFADRVF DLFDTKHNGI
101: LGFEEFARAL SVFHPNASVE EKIDFSFQLY DLKQQGFIER QEVKQMVVAT LAESGMNLSD EIIENIIDKT FEEADTKHDG KIDREEWHNL VLRHPSLLKN
201: MTLQYLKDIT TTFPSFVFHS QVDDT
101: LGFEEFARAL SVFHPNASVE EKIDFSFQLY DLKQQGFIER QEVKQMVVAT LAESGMNLSD EIIENIIDKT FEEADTKHDG KIDREEWHNL VLRHPSLLKN
201: MTLQYLKDIT TTFPSFVFHS QVDDT
001: MSQCIDGFKH VCSSFFRCFD IDIYKQSGGL GDPELLARET VFSVSEIEAL YELFKKISSA VIDDGLINKE EFQLALFKTN KKESLFADRV FDLFDTKHNG
101: ILGFEEFARA LSVFHPNAPI EDKIDFSFQL YDLKQQGFIE RQEVKQMVVA TLAESGMNLS DEIIESIIDK TFEEADTKHD GRIDKEEWRT LVLRHPSLLK
201: NMTLQYLKDI TTTFPSFVFH SQVEDT
101: ILGFEEFARA LSVFHPNAPI EDKIDFSFQL YDLKQQGFIE RQEVKQMVVA TLAESGMNLS DEIIESIIDK TFEEADTKHD GRIDKEEWRT LVLRHPSLLK
201: NMTLQYLKDI TTTFPSFVFH SQVEDT
Arabidopsis Description
ATCBL3calcineurin B-like 3 [Source:TAIR;Acc:AT4G26570]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.