Factsheet for TraesCS4D01G162400.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G251800.1
TraesCS2B01G271700.1
TraesCS2D01G252600.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G64480.1	TraesCS2A01G251800.1	AT1G30270.1	16814720
AT1G64480.1	TraesCS2B01G271700.1	AT1G30270.1	16814720
AT1G64480.1	TraesCS2D01G252600.1	AT1G30270.1	16814720

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G352200.1	Wheat	cytosol	64.79	62.16
TraesCS1B01G370500.1	Wheat	cytosol	64.32	61.71
TraesCS1D01G358400.1	Wheat	mitochondrion	62.91	61.47
TraesCS1D01G358200.2	Wheat	cytosol, plastid	64.79	60.79
Os05t0534400-01	Rice	plasma membrane	56.81	57.62
KXG22403	Sorghum	cytosol	56.34	56.6
GSMUA_Achr1P13780_001	Banana	cytosol	47.89	52.31
GSMUA_Achr1P13790_001	Banana	cytosol	51.64	50.93
TraesCS1D01G261200.1	Wheat	cytosol	49.77	49.77
TraesCS1D01G346500.1	Wheat	cytosol	47.42	46.98
TraesCS1D01G346400.1	Wheat	cytosol	47.42	46.98
AT1G64480.1	Thale cress	cytosol, mitochondrion	46.48	46.26
Bra027703.1-P	Field mustard	mitochondrion	46.01	45.79
CDY64882	Canola	mitochondrion	46.01	45.79
CDY46533	Canola	mitochondrion	46.01	45.79
HORVU1Hr1G080820.4	Barley	cytosol, nucleus, plastid	53.99	45.45
VIT_02s0025g01640.t01	Wine grape	cytosol	46.01	44.75
PGSC0003DMT400046089	Potato	cytosol	40.38	44.1
Solyc12g055920.1.1	Tomato	cytosol, mitochondrion	44.6	42.04
Solyc08g036590.1.1	Tomato	endoplasmic reticulum, extracellular	42.25	39.3
TraesCS5D01G132500.2	Wheat	cytosol	41.31	38.94
TraesCS4D01G068700.1	Wheat	cytosol	40.85	38.67
TraesCS5D01G072100.1	Wheat	cytosol	40.85	38.67
Zm00001d038730_P001	Maize	cytosol	55.87	38.26
Solyc08g054570.1.1	Tomato	cytosol	28.64	32.8
TraesCS3D01G211300.1	Wheat	cytosol	43.66	32.29

Protein Annotations

EnsemblPlants:TraesCS4D01G162400.1	EnsemblPlantsGene:TraesCS4D01G162400	Gene3D:1.10.238.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005509
InterPro:EF-hand-dom_pair	InterPro:EF_hand_dom	InterPro:IPR002048	PANTHER:PTHR23056	PANTHER:PTHR23056:SF45	PFscan:PS50222
SUPFAM:SSF47473	MapMan:35.1	:	:	:	:

Description

No Description!

Coordinates

chr4D:+:247514372..247523816

Molecular Weight (calculated)

24850.8 Da

IEP (calculated)

7.423

GRAVY (calculated)

-0.279

Length

213 amino acids

Sequence
(BLAST)

001: MGCAFLSSSS PRKREQRAQG YEESAVLAAE TSFTVNKVEA LYELYKKLSF SIFKDGLIHK QEFRLALFRT SKGANLFVDR VFDLFDLKRN RVIEFGEFMR
101: SLSIFHPKAP ESKNTAFAFK LYDLRGTGYI KKEELREMVV ALLDESVLCL SDNTVEEIIN DVCNQQDIFS HCELFWCFPS NMLCSLLLYS FWTFRRSVKK
201: TQMEEEGHHR GRE

Best Arabidopsis Sequence Match ( AT1G64480.1 )
(BLAST)

001: MLAFVKCFSL KRAKHPRGYE DPHVLASETP FTVNEIEALH DLFKKLSTSI INDGLIHKEE FLLALFRNGS MQNLFADRVF YMFDRKRNGV IEFGEFVRSL
101: SIFHPYTPEH EKSAFMFKLF DLHGTGFIEP HELKKMVGAL LGETDLELSE ESIEAIVEQT MLEVDTNKDG KIDEEEWKEL VAKNPSILKN MTLPYLKEVT
201: LAFPSFVLDS EVED

Arabidopsis Description

CBL8Calcineurin B-like protein 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9FUQ7]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.