CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 5
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra026422.1-P	Field mustard	cytosol, plastid	85.87	94.8
CDX89325	Canola	plastid	92.75	93.09
Solyc07g065820.2.1	Tomato	cytosol	55.07	69.41
PGSC0003DMT400057342	Potato	cytosol, extracellular	55.07	69.41
CDY42728	Canola	cytosol	55.43	67.7
KRH46425	Soybean	endoplasmic reticulum	55.43	67.7
KRG98442	Soybean	cytosol	55.43	67.7
CDX92814	Canola	cytosol	55.43	67.7
Os03t0626800-01	Rice	cytosol	55.07	67.56
Solyc12g015870.1.1	Tomato	cytosol	54.71	67.41
PGSC0003DMT400076653	Potato	cytosol	54.71	67.41
CDX89324	Canola	cytosol	55.07	67.26
CDX94315	Canola	cytosol	55.07	67.26
GSMUA_Achr9P12840_001	Banana	cytosol	54.71	66.81
Zm00001d033295_P001	Maize	cytosol	54.35	66.67
CDY62266	Canola	cytosol	11.59	66.67
Zm00001d030955_P003	Maize	cytosol	54.35	66.67
Os12t0597000-01	Rice	plasma membrane, vacuole	53.99	66.22
OQU79501	Sorghum	cytosol	53.99	66.22
TraesCS4D01G068700.1	Wheat	cytosol	53.62	65.78
TraesCS4A01G245500.1	Wheat	cytosol	53.62	65.78
PGSC0003DMT400037245	Potato	cytosol	52.9	65.77
CDY67196	Canola	cytosol	16.67	65.71
CDY64981	Canola	cytosol	53.62	65.49
CDY06547	Canola	cytosol	53.62	65.49
HORVU5Hr1G016320.1	Barley	cytosol	52.17	64.0
HORVU4Hr1G011670.1	Barley	vacuole	52.17	64.0
TraesCS5B01G071500.1	Wheat	cytosol	52.17	64.0
TraesCS5A01G060600.1	Wheat	cytosol	52.17	64.0
TraesCS5D01G072100.1	Wheat	cytosol	52.17	64.0
Zm00001d041392_P001	Maize	cytosol, extracellular	39.13	63.16
CDY36774	Canola	cytosol	54.35	63.03
CDY11963	Canola	cytosol	53.62	62.18
TraesCS4B01G069900.1	Wheat	cytosol	50.72	53.85
CDY34452	Canola	cytosol, extracellular	42.75	51.98
CDY32236	Canola	cytosol, extracellular	42.39	51.54
CDX90465	Canola	cytosol	39.49	51.17
CDX78784	Canola	cytosol	39.13	50.7
CDY09616	Canola	cytosol	39.13	50.7
CDY25987	Canola	cytosol	39.13	50.7
CDY28977	Canola	cytosol	39.13	50.7
CDY69850	Canola	cytosol	39.13	50.7
CDY38412	Canola	cytosol	39.13	50.7
CDY40580	Canola	cytosol	38.41	49.77
CDY04300	Canola	cytosol	22.83	48.09
Zm00001d041393_P001	Maize	extracellular	17.75	45.37
CDY19840	Canola	cytosol	34.78	44.04
CDY64882	Canola	mitochondrion	33.7	43.46
CDY46533	Canola	mitochondrion	33.7	43.46
CDX80425	Canola	cytosol	34.42	42.99
CDY59968	Canola	cytosol, plasma membrane	34.42	42.99
CDX87133	Canola	cytosol	33.33	42.59
CDY44281	Canola	cytosol	34.06	42.53
CDY28278	Canola	cytosol	36.96	41.46
CDX68929	Canola	cytosol, endoplasmic reticulum, mitochondrion	36.96	40.96
CDX75314	Canola	cytosol, endoplasmic reticulum	36.96	40.96
CDY45024	Canola	cytosol	35.87	40.24
CDX72384	Canola	cytosol	36.96	38.2
CDY56859	Canola	cytosol	27.54	37.07
CDY13513	Canola	endoplasmic reticulum, nucleus, plasma membrane	28.99	36.87
CDX92464	Canola	cytosol	26.81	36.1
VIT_00s0194g00040.t01	Wine grape	cytosol	11.96	8.15

Protein Annotations

Gene3D:1.10.238.10	MapMan:35.1	GO:A0A078DYN0	EnsemblPlants:CDX94316	ProteinID:CDX94316	ProteinID:CDX94316.1
InterPro:EF-hand-dom_pair	InterPro:EF_Hand_1_Ca_BS	InterPro:EF_hand_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005509
EnsemblPlantsGene:GSBRNA2T00157417001	InterPro:IPR002048	PFAM:PF13202	PFAM:PF13833	ScanProsite:PS00018	PFscan:PS50222
PANTHER:PTHR23056	PANTHER:PTHR23056:SF57	SMART:SM00054	SUPFAM:SSF47473	UniParc:UPI0004EEF18F	SEG:seg

Description

BnaC01g18680D

Coordinates

chrLK031881:+:181271..185352

Molecular Weight (calculated)

30890.5 Da

IEP (calculated)

4.405

GRAVY (calculated)

-0.243

Length

276 amino acids

Sequence
(BLAST)

001: MSSLPILSSP SATNQPETKS SAVNRCNSES TVPGSSMEAK EAPPPTTVVS TQTQPITEPE TIIRPEEQSG TVEHNLSEIL ARETVFSLSE IEALYDLYRK
101: ISSAVTDDGL INKEGFQLAL FMKNKKESLF ADGVFDLFDT KHNGILGFEE FARALSVFHP NAPIDDKIDC YFRFSCMILS SKVIESQEVK QMVVSTLAQA
201: GMKLPNDVTE SIIDKTFEEV DANHDGRIDK EEWRILVLKH PSLLKKITLE YLKDITTTFP SFVFDDDYCV SGLWFE

Best Arabidopsis Sequence Match ( AT4G16350.2 )
(BLAST)

001: MMMQCLDGLK HLALILLTCC DADPPKVRQN PKDVARGTVF TVNEIEALYE LFKSISKNGL IDKEQFQLVL FKMNTTRSLF ADRVFDLFDT KNTGILDFEA
101: FARSLSVFHP NAKFEDKIEF SFKLYDLNQQ GYIKRQEVKQ MVVRTLAESG MNLSDHVIES IIDKTFEEAD TKLDGKIDKE EWRSLVLRHP SLLQNMSLQH
201: LKDVTKTFPN FVFHTIVTDT PSELDG

Arabidopsis Description

CBL6Calcineurin B-like protein 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9C5P6]
SUBAcon: [extracellular,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.