CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, nucleus, plasma membrane

Predictor Summary:

plastid 1
mitochondrion 1
endoplasmic reticulum 2
extracellular 1
vacuole 1
plasma membrane 2
golgi 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX78272
CDX78945
CDX78949
CDX99356
CDY02896
CDY09323
CDY36813
CDY44603
CDY55834
CDY61658

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G33000.1	CDX78272	AT3G54840.1	17825054
AT4G33000.1	CDY02896	AT3G54840.1	17825054
AT4G33000.1	CDY55834	AT3G54840.1	17825054
AT4G33000.1	CDY61658	AT3G54840.1	17825054
AT4G33000.1	CDX78945	AT4G19640.1	17825054
AT4G33000.1	CDX78949	AT4G19640.1	17825054
AT4G33000.1	CDX99356	AT4G19640.1	17825054
AT4G33000.1	CDY09323	AT4G19640.1	17825054
AT4G33000.1	CDY36813	AT5G35410.1	17449811
AT4G33000.1	CDY44603	AT5G35410.1	17449811
AT4G33000.1	CDY36813	AT5G35410.1	17825054
AT4G33000.1	CDY44603	AT5G35410.1	17825054
AT4G33000.1	CDY36813	AT5G35410.1	19448033
AT4G33000.1	CDY44603	AT5G35410.1	19448033

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra037030.1-P	Field mustard	cytosol	91.71	77.13
CDX75314	Canola	cytosol, endoplasmic reticulum	88.02	76.71
CDX72384	Canola	cytosol	93.55	76.03
CDX68929	Canola	cytosol, endoplasmic reticulum, mitochondrion	87.1	75.9
CDY28278	Canola	cytosol	82.49	72.76
CDY45024	Canola	cytosol	82.03	72.36
CDY04300	Canola	cytosol	41.94	69.47
AT4G33000.1	Thale cress	golgi, plastid	80.18	67.97
CDY62266	Canola	cytosol	12.9	58.33
VIT_04s0008g00950.t01	Wine grape	cytosol, endoplasmic reticulum, mitochondrion, plastid	67.74	56.98
Solyc08g065330.2.1	Tomato	endoplasmic reticulum, extracellular	66.36	56.03
VIT_04s0008g00960.t01	Wine grape	plastid	62.67	54.18
KRH47134	Soybean	cytosol	63.59	52.47
GSMUA_Achr3P32370_001	Banana	cytosol	63.59	52.27
Os01t0711500-00	Rice	plastid	63.59	51.88
KRH44162	Soybean	cytosol, extracellular	63.13	51.7
PGSC0003DMT400076980	Potato	mitochondrion	66.36	49.66
TraesCS3B01G235500.1	Wheat	cytosol	65.9	49.65
TraesCS3D01G211300.1	Wheat	cytosol	65.9	49.65
CDX94315	Canola	cytosol	50.69	48.67
CDX89324	Canola	cytosol	50.69	48.67
TraesCS3A01G053300.1	Wheat	golgi	65.44	48.63
KRH05482	Soybean	cytosol, plasma membrane, plastid	57.6	48.45
CDY19840	Canola	cytosol	48.39	48.17
CDY42728	Canola	cytosol	49.77	47.79
CDX92814	Canola	cytosol	49.77	47.79
KXG33232	Sorghum	endoplasmic reticulum	61.75	47.35
CDY67196	Canola	cytosol	15.21	47.14
CDX80425	Canola	cytosol	47.93	47.06
TraesCS3B01G064500.2	Wheat	cytosol, golgi, mitochondrion	64.06	46.96
CDY06547	Canola	cytosol	48.85	46.9
CDY64981	Canola	cytosol	48.85	46.9
CDY40580	Canola	cytosol	45.62	46.48
CDY28977	Canola	cytosol	45.62	46.48
CDY09616	Canola	cytosol	45.62	46.48
CDX87133	Canola	cytosol	46.08	46.3
CDX90465	Canola	cytosol	45.16	46.01
CDY69850	Canola	cytosol	45.16	46.01
CDY25987	Canola	cytosol	45.16	46.01
CDY38412	Canola	cytosol	44.7	45.54
CDY44281	Canola	cytosol	46.08	45.25
CDX78784	Canola	cytosol	44.24	45.07
KXG32770	Sorghum	cytosol, plastid	65.9	44.83
CDY59968	Canola	cytosol, plasma membrane	45.16	44.34
CDY11963	Canola	cytosol	48.39	44.12
CDY36774	Canola	cytosol	48.39	44.12
CDY64882	Canola	mitochondrion	42.86	43.46
CDY46533	Canola	mitochondrion	42.86	43.46
CDY32236	Canola	cytosol, extracellular	43.78	41.85
CDY34452	Canola	cytosol, extracellular	42.86	40.97
TraesCS3A01G208300.2	Wheat	cytosol, mitochondrion	65.9	39.39
Zm00001d044285_P003	Maize	plastid	65.44	39.34
CDY56859	Canola	cytosol	36.87	39.02
CDX92464	Canola	cytosol	35.94	38.05
Os01t0579600-01	Rice	cytosol	34.56	34.4
CDX89325	Canola	plastid	41.47	32.73
CDX94316	Canola	plastid	36.87	28.99

Protein Annotations

Gene3D:1.10.238.10	MapMan:35.1	GO:A0A078FMH0	UniProt:A0A078FMH0	EnsemblPlants:CDY13513	ProteinID:CDY13513
ProteinID:CDY13513.1	InterPro:EF-hand-dom_pair	InterPro:EF_Hand_1_Ca_BS	InterPro:EF_hand_dom	GO:GO:0003674	GO:GO:0005488
GO:GO:0005509	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	EnsemblPlantsGene:GSBRNA2T00077828001	InterPro:IPR002048
PFAM:PF13499	ScanProsite:PS00018	PFscan:PS50222	PANTHER:PTHR23056	PANTHER:PTHR23056:SF26	SMART:SM00054
SUPFAM:SSF47473	TMHMM:TMhelix	UniParc:UPI0004EDC0D4	:	:	:

Description

BnaA03g52310DBnaA03g52310D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FMH0]

Coordinates

chrLK032035:+:783593..785392

Molecular Weight (calculated)

24898.2 Da

IEP (calculated)

4.455

GRAVY (calculated)

0.073

Length

217 amino acids

Sequence
(BLAST)

001: MDLPGVSSRS SSLTVGEQLC AVFIPLFAIF DFLFSTVGQC FDCRSCRSPQ ICQRENLSLL ALDSPFSVNE VEALYELFKK LICSIIDDGL IHKEELQLAI
101: FQAPYGENLF LDRVFDLFDE KKNGKIDFAF RLYDLRQTGF IEREEVHQMV AAILMESEMI LSDELLTMII DKTFADADSD KDGKISKEEW KVYVLKHPTL
201: LKNMTLPYLK YQISSFV

Best Arabidopsis Sequence Match ( AT4G33000.1 )
(BLAST)

001: MTTGRPNNIL ALKISTRSSS LTVGEQFCAV FIPFFAIIDV LVSSVGQCFD CRSTSPRTCQ HADLERLARE SQFSVNEVEA LYELFKKLSC SIIDDGLIHK
101: EELRLALFQA PYGENLFLDR VFDLFDEKKN GVIEFEEFIH ALSVFHPYAS IQEKTDFAFR LYDLRQTGFI EREEVQQMVS AILLESDMML SDELLTMIID
201: KTFADADSDK DGKISKDEWN VYVHKHPSLL KNMTLPYLKD VTTAFPSFIF NTEVED

Arabidopsis Description

CBL10Calcineurin B-like 10 [Source:UniProtKB/TrEMBL;Acc:M5BEI3]
SUBAcon: [golgi,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.