Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX78949 | Canola | cytosol | 98.01 | 98.01 |
| AT4G19640.1 | Thale cress | cytosol | 96.02 | 96.5 |
| CDX78945 | Canola | cytosol | 24.38 | 96.08 |
| CDX82579 | Canola | cytosol | 90.05 | 90.5 |
| CDY13065 | Canola | cytosol | 89.55 | 90.0 |
| CDY39412 | Canola | cytosol | 89.55 | 90.0 |
| CDY23153 | Canola | cytosol | 89.05 | 89.5 |
| Solyc02g069370.2.1 | Tomato | plastid | 83.08 | 83.5 |
| KRG98019 | Soybean | cytosol | 78.61 | 79.0 |
| EER93694 | Sorghum | cytosol | 78.11 | 77.34 |
| Os03t0666500-01 | Rice | plasma membrane | 78.11 | 77.34 |
| Zm00001d031179_P001 | Maize | extracellular, mitochondrion | 78.11 | 76.96 |
| Zm00001d013583_P001 | Maize | cytosol | 77.61 | 76.85 |
| GSMUA_Achr7P16440_001 | Banana | cytosol | 77.11 | 76.73 |
| KXG24102 | Sorghum | cytosol | 77.61 | 76.47 |
| TraesCS4B01G019100.2 | Wheat | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole | 77.61 | 76.1 |
| TraesCS4A01G294600.1 | Wheat | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole | 77.61 | 76.1 |
| Os12t0631100-01 | Rice | plasma membrane | 76.12 | 75.37 |
| PGSC0003DMT400055259 | Potato | cytosol, plastid | 74.13 | 74.5 |
| PGSC0003DMT400050774 | Potato | cytosol | 74.13 | 74.5 |
| TraesCS5B01G014400.1 | Wheat | plastid | 77.11 | 74.16 |
| HORVU5Hr1G002970.1 | Barley | plastid | 77.11 | 74.16 |
| GSMUA_Achr9P10010_001 | Banana | cytosol | 75.12 | 73.66 |
| TraesCS5D01G022200.2 | Wheat | golgi | 76.12 | 73.21 |
| TraesCS4D01G017300.1 | Wheat | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole | 77.61 | 72.56 |
| CDY09323 | Canola | extracellular, plastid, vacuole | 40.8 | 71.93 |
| KRH20053 | Soybean | endoplasmic reticulum | 78.61 | 67.81 |
| GSMUA_Achr6P31600_001 | Banana | cytosol | 66.67 | 65.69 |
| HORVU4Hr1G002980.2 | Barley | cytosol | 77.61 | 65.27 |
| Zm00001d034949_P001 | Maize | extracellular, mitochondrion | 77.11 | 62.5 |
| VIT_04s0079g00760.t01 | Wine grape | cytosol | 70.15 | 61.57 |
| CDY61658 | Canola | cytosol | 48.76 | 48.51 |
| CDY55834 | Canola | cytosol, plastid | 48.76 | 48.28 |
| CDX78272 | Canola | cytosol | 48.76 | 48.28 |
| CDY48241 | Canola | cytosol | 40.8 | 39.42 |
| CDX74672 | Canola | cytosol | 40.8 | 39.42 |
| CDX83425 | Canola | cytosol | 40.8 | 39.42 |
| CDX95606 | Canola | cytosol | 40.8 | 39.42 |
| CDY30479 | Canola | cytosol | 40.8 | 39.42 |
| CDX81166 | Canola | cytosol | 39.8 | 38.65 |
| CDX78373 | Canola | cytosol | 39.8 | 38.65 |
| CDX81264 | Canola | cytosol | 38.81 | 38.24 |
| CDX96987 | Canola | cytosol | 38.81 | 37.86 |
| CDX69850 | Canola | cytosol | 38.81 | 37.86 |
| CDY13772 | Canola | cytosol | 38.81 | 37.68 |
| CDY63926 | Canola | cytosol | 38.81 | 36.45 |
| CDY18689 | Canola | cytosol | 39.3 | 36.41 |
| CDY31610 | Canola | mitochondrion | 38.81 | 30.23 |
| CDY02896 | Canola | endoplasmic reticulum, golgi | 40.3 | 30.11 |
| CDX76936 | Canola | cytosol | 38.81 | 28.36 |
| CDY23446 | Canola | cytosol | 40.8 | 13.64 |
Protein Annotations
| MapMan:22.8.1.6 | Gene3D:3.40.50.300 | GO:A0A078EDY4 | EnsemblPlants:CDX99356 | ProteinID:CDX99356 | ProteinID:CDX99356.1 |
| GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0003924 | GO:GO:0005488 | GO:GO:0005525 |
| GO:GO:0016787 | EnsemblPlantsGene:GSBRNA2T00107661001 | InterPro:P-loop_NTPase | PFAM:PF00071 | PRINTS:PR00449 | PFscan:PS51419 |
| PANTHER:PTHR24073 | PANTHER:PTHR24073:SF622 | SMART:SM00173 | SMART:SM00174 | SMART:SM00175 | SMART:SM00176 |
| SUPFAM:SSF52540 | InterPro:Small_GTP-bd_dom | InterPro:Small_GTPase | TIGRFAMs:TIGR00231 | UniParc:UPI0004EE502A | : |
Description
BnaC01g11960D
Coordinates
chrLK031910:+:69804..71511
Molecular Weight (calculated)
21962.2 Da
IEP (calculated)
5.344
GRAVY (calculated)
-0.096
Length
201 amino acids
Sequence
(BLAST)
(BLAST)
001: MATAGNKTIN AKLVLLGDVG AGKSSLVLRF VKDQFVEFQE STIGAAFFSQ TLAVDDATVK FEIWDTAGQE RYHSLAPMYY RGAAAAIIVF DVTNQASFER
101: AKKWVQELQA QVGNANMVMA LAGNKSDLLD ARKVSAEEAQ TYAQENGLFF METSAKTAAN VKEIFYEIAR RLPRVQPTEN PTGMVLPDRA MDRAVSSSCC
201: A
101: AKKWVQELQA QVGNANMVMA LAGNKSDLLD ARKVSAEEAQ TYAQENGLFF METSAKTAAN VKEIFYEIAR RLPRVQPTEN PTGMVLPDRA MDRAVSSSCC
201: A
001: MAAAGNKSIN AKLVLLGDVG AGKSSLVLRF VKDQFVEFQE STIGAAFFSQ TLAVNDATVK FEIWDTAGQE RYHSLAPMYY RGAAAAIIVF DVTNQASFER
101: AKKWVQELQA QGNPNMVMAL AGNKSDLLDA RKVTAEDAQT YAQENGLFFM ETSAKTATNV KEIFYEIARR LPRVQPTENP TGMVLPDRAM DRAVSSSCCA
101: AKKWVQELQA QGNPNMVMAL AGNKSDLLDA RKVTAEDAQT YAQENGLFFM ETSAKTATNV KEIFYEIARR LPRVQPTENP TGMVLPDRAM DRAVSSSCCA
Arabidopsis Description
RABF2BRABF2B [Source:UniProtKB/TrEMBL;Acc:A0A178UXV7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.