Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 2
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra038535.1-P | Field mustard | cytosol | 68.73 | 91.3 |
| CDY13772 | Canola | cytosol | 68.73 | 91.3 |
| AT2G22290.1 | Thale cress | cytosol | 65.45 | 86.96 |
| KRH43179 | Soybean | cytosol | 61.82 | 82.13 |
| KRH59334 | Soybean | endoplasmic reticulum | 61.82 | 82.13 |
| KRG97576 | Soybean | cytosol | 61.45 | 81.64 |
| EER97564 | Sorghum | cytosol | 61.82 | 81.34 |
| Zm00001d006905_P001 | Maize | mitochondrion | 61.82 | 81.34 |
| CDX96987 | Canola | cytosol | 60.73 | 81.07 |
| GSMUA_Achr6P10400_001 | Banana | cytosol | 60.73 | 80.68 |
| GSMUA_Achr2P22200_001 | Banana | cytosol | 60.73 | 80.68 |
| PGSC0003DMT400056111 | Potato | cytosol | 60.73 | 80.68 |
| CDX69850 | Canola | cytosol | 60.36 | 80.58 |
| Solyc03g078570.2.1 | Tomato | cytosol | 60.36 | 80.19 |
| CDX78373 | Canola | cytosol | 60.36 | 80.19 |
| CDX81166 | Canola | cytosol | 60.36 | 80.19 |
| KRH31293 | Soybean | cytosol | 51.27 | 79.21 |
| VIT_00s0665g00040.t01 | Wine grape | extracellular | 51.27 | 79.21 |
| CDX83425 | Canola | cytosol | 58.91 | 77.88 |
| CDX74672 | Canola | cytosol | 58.91 | 77.88 |
| CDY48241 | Canola | cytosol | 58.91 | 77.88 |
| CDY30479 | Canola | cytosol | 58.91 | 77.88 |
| CDX95606 | Canola | cytosol | 58.91 | 77.88 |
| CDY63926 | Canola | cytosol | 57.82 | 74.3 |
| Os03t0191400-01 | Rice | plasma membrane | 56.73 | 72.56 |
| KXG39985 | Sorghum | cytosol | 56.0 | 72.3 |
| TraesCS4D01G305100.1 | Wheat | cytosol | 55.27 | 71.03 |
| TraesCS4A01G407500.1 | Wheat | cytosol | 54.91 | 70.56 |
| TraesCS4B01G306900.1 | Wheat | cytosol | 54.55 | 70.09 |
| CDX81264 | Canola | cytosol | 49.82 | 67.16 |
| CDY18689 | Canola | cytosol | 49.82 | 63.13 |
| CDY31610 | Canola | mitochondrion | 57.45 | 61.24 |
| Zm00001d028012_P001 | Maize | cytosol, extracellular | 46.55 | 57.66 |
| HORVU4Hr1G078690.2 | Barley | plastid | 55.64 | 49.84 |
| CDX99356 | Canola | cytosol | 28.36 | 38.81 |
| CDY61658 | Canola | cytosol | 28.0 | 38.12 |
| CDY55834 | Canola | cytosol, plastid | 28.0 | 37.93 |
| CDX78272 | Canola | cytosol | 28.0 | 37.93 |
| CDX78949 | Canola | cytosol | 27.64 | 37.81 |
| CDY39412 | Canola | cytosol | 26.91 | 37.0 |
| CDY23153 | Canola | cytosol | 26.91 | 37.0 |
| CDY13065 | Canola | cytosol | 26.91 | 37.0 |
| CDX82579 | Canola | cytosol | 26.91 | 37.0 |
| CDX78945 | Canola | cytosol | 5.45 | 29.41 |
| CDY09323 | Canola | extracellular, plastid, vacuole | 11.64 | 28.07 |
| CDY23446 | Canola | cytosol | 59.27 | 27.12 |
| CDY02896 | Canola | endoplasmic reticulum, golgi | 24.0 | 24.54 |
Protein Annotations
| MapMan:22.8.1.8 | Gene3D:3.40.50.300 | GO:A0A078CIA2 | EnsemblPlants:CDX76936 | ProteinID:CDX76936 | ProteinID:CDX76936.1 |
| GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0003924 | GO:GO:0005488 | GO:GO:0005525 |
| GO:GO:0016787 | EnsemblPlantsGene:GSBRNA2T00127471001 | InterPro:P-loop_NTPase | PFAM:PF00071 | PRINTS:PR00449 | PFscan:PS51419 |
| PANTHER:PTHR24073 | PANTHER:PTHR24073:SF475 | SMART:SM00173 | SMART:SM00174 | SMART:SM00175 | SMART:SM00176 |
| SUPFAM:SSF52540 | InterPro:Small_GTP-bd_dom | InterPro:Small_GTPase | TIGRFAMs:TIGR00231 | UniParc:UPI0004EE722D | SEG:seg |
Description
BnaC08g35220D
Coordinates
chrLK031808:-:2165093..2166788
Molecular Weight (calculated)
31263.8 Da
IEP (calculated)
8.928
GRAVY (calculated)
-0.187
Length
275 amino acids
Sequence
(BLAST)
(BLAST)
001: MASVSPLAKY KLVFLGDQSV GKTSIITRFM YDKFDTTYQA TIGIDFLSKT MYLEDRTVRL QLWDTAGQER FRSLIPSYIR DSSVAVVVYD VSNRLSFLNT
101: SKWIEEVRTE RAGDVIIVLV GNKTDLVDKR QVSIEEGDSK GREYGVIFIE TSAKAGFNIK PLFRKIAAAL PGMDSYSNMK TEDMATNKEE AARVDGSQRQ
201: EKRVIFLTNK SLRSFGLHLR LVIVYLSKCY KEAVRWSNST NGTDNTTMIN EILILMHLPE ALMRQHTELC LEVVP
101: SKWIEEVRTE RAGDVIIVLV GNKTDLVDKR QVSIEEGDSK GREYGVIFIE TSAKAGFNIK PLFRKIAAAL PGMDSYSNMK TEDMATNKEE AARVDGSQRQ
201: EKRVIFLTNK SLRSFGLHLR LVIVYLSKCY KEAVRWSNST NGTDNTTMIN EILILMHLPE ALMRQHTELC LEVVP
001: MASVSPLAKY KLVFLGDQSV GKTSIITRFM YDKFDTTYQA TIGIDFLSKT MYLEDRTVRL QLWDTAGQER FRSLIPSYIR DSSVAVVVYD VANRLSFLNT
101: SKWIEEVRNE RAGDVIIVLV GNKTDLVEKR QVSIEEGDSK GREYGVMFIE TSAKAGFNIK PLFRKIAAAL PGMESYSNTK NEDMVDVNLK PTSNSSQGDQ
201: QGGACSC
101: SKWIEEVRNE RAGDVIIVLV GNKTDLVEKR QVSIEEGDSK GREYGVMFIE TSAKAGFNIK PLFRKIAAAL PGMESYSNTK NEDMVDVNLK PTSNSSQGDQ
201: QGGACSC
Arabidopsis Description
RABH1DRas-related protein RABH1d [Source:UniProtKB/Swiss-Prot;Acc:Q9SID8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.