CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 2
cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT4G39890.1	Thale cress	cytosol	92.52	92.52
CDY13772	Canola	cytosol	81.78	84.54
Bra017875.1-P	Field mustard	mitochondrion	99.53	82.56
CDY31610	Canola	mitochondrion	99.53	82.56
CDX96987	Canola	cytosol	78.5	81.55
CDX69850	Canola	cytosol	78.04	81.07
CDY30479	Canola	cytosol	78.5	80.77
CDY48241	Canola	cytosol	78.5	80.77
CDX74672	Canola	cytosol	78.5	80.77
CDX95606	Canola	cytosol	78.5	80.77
CDX83425	Canola	cytosol	78.5	80.77
CDX78373	Canola	cytosol	78.04	80.68
CDX81166	Canola	cytosol	78.04	80.68
CDX81264	Canola	cytosol	65.42	68.63
CDY18689	Canola	cytosol	65.42	64.52
CDX76936	Canola	cytosol	74.3	57.82
CDX99356	Canola	cytosol	36.45	38.81
CDX82579	Canola	cytosol	35.98	38.5
CDY39412	Canola	cytosol	35.98	38.5
CDY13065	Canola	cytosol	35.51	38.0
CDY23153	Canola	cytosol	35.51	38.0
CDX78949	Canola	cytosol	35.51	37.81
CDY61658	Canola	cytosol	35.51	37.62
CDY55834	Canola	cytosol, plastid	35.51	37.44
CDX78272	Canola	cytosol	35.51	37.44
CDX78945	Canola	cytosol	7.48	31.37
CDY23446	Canola	cytosol	78.04	27.79
CDY09323	Canola	extracellular, plastid, vacuole	14.49	27.19
CDY02896	Canola	endoplasmic reticulum, golgi	30.37	24.16

Protein Annotations

MapMan:22.8.1.8	Gene3D:3.40.50.300	GO:A0A078JCX4	UniProt:A0A078JCX4	EnsemblPlants:CDY63926	ProteinID:CDY63926
ProteinID:CDY63926.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488
GO:GO:0005525	GO:GO:0016787	EnsemblPlantsGene:GSBRNA2T00039756001	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449
PFscan:PS51419	PANTHER:PTHR24073	PANTHER:PTHR24073:SF475	SMART:SM00173	SMART:SM00174	SMART:SM00175
SMART:SM00176	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231	UniParc:UPI00019AA89D
SEG:seg	:	:	:	:	:

Description

BnaC07g51320DBnaC07g51320D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JCX4]

Coordinates

chrLK034369:-:22256..23964

Molecular Weight (calculated)

23515.9 Da

IEP (calculated)

6.538

GRAVY (calculated)

-0.269

Length

214 amino acids

Sequence
(BLAST)

001: MASVSALAKF KLVFLGDQSV GKTSIITRFM YDKFDTSYQP TIGIDFLSKT MYLEDRTVRL QLWDTAGQER FRSLIPSYIR DSSVAIVVYD VANRQTFLNI
101: PKWIDDVHRE RGGSGDVIIV LVGNKTDLVD KRQVSISEGE EKGKEHGVMF IETSAKENFN IKALFRKIAA ALPGMDSYSS ATKSDDMVDV NLKNTSSSSQ
201: GEQQGGGGGG GCSC

Best Arabidopsis Sequence Match ( AT4G39890.1 )
(BLAST)

001: MASVSPLAKF KLVFLGDQSV GKTSIITRFM YDKFDTTYQP TIGIDFLSKT MYLEDRTVRL QLWDTAGQER FRSLIPSYIR DSSVAIVVYD VSNRQTFLNT
101: SKWIEDVHRE RGQSNVIIVL VGNKTDLVEK RQVSISEGED KGKEYGVMFI ETSAKENFNI KALFRKIAAA LPGVDSYSLA TKSDDMVDVN LKTTSNSSQG
201: EQQGGAGGGG GCSC

Arabidopsis Description

RABH1CRABH1c [Source:UniProtKB/TrEMBL;Acc:A0A178V1R4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.