CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 5
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY63926	Canola	cytosol	82.56	99.53
Bra017875.1-P	Field mustard	mitochondrion	99.22	99.22
AT4G39890.1	Thale cress	cytosol	76.36	92.06
CDY13772	Canola	cytosol	67.44	84.06
CDX96987	Canola	cytosol	64.73	81.07
CDX69850	Canola	cytosol	64.34	80.58
CDX74672	Canola	cytosol	64.73	80.29
CDY48241	Canola	cytosol	64.73	80.29
CDY30479	Canola	cytosol	64.73	80.29
CDX95606	Canola	cytosol	64.73	80.29
CDX83425	Canola	cytosol	64.73	80.29
CDX81166	Canola	cytosol	64.34	80.19
CDX78373	Canola	cytosol	64.34	80.19
CDX81264	Canola	cytosol	53.88	68.14
CDY18689	Canola	cytosol	53.88	64.06
CDX76936	Canola	cytosol	61.24	57.45
CDX99356	Canola	cytosol	30.23	38.81
CDX82579	Canola	cytosol	29.84	38.5
CDY39412	Canola	cytosol	29.84	38.5
CDY13065	Canola	cytosol	29.46	38.0
CDY23153	Canola	cytosol	29.46	38.0
CDX78949	Canola	cytosol	29.46	37.81
CDY61658	Canola	cytosol	29.46	37.62
CDX78272	Canola	cytosol	29.46	37.44
CDY55834	Canola	cytosol, plastid	29.46	37.44
CDX78945	Canola	cytosol	6.2	31.37
CDY23446	Canola	cytosol	66.67	28.62
CDY09323	Canola	extracellular, plastid, vacuole	12.02	27.19
CDY02896	Canola	endoplasmic reticulum, golgi	25.19	24.16

Protein Annotations

MapMan:22.8.1.8	Gene3D:3.40.50.300	GO:A0A078GYT2	UniProt:A0A078GYT2	EnsemblPlants:CDY31610	ProteinID:CDY31610
ProteinID:CDY31610.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488
GO:GO:0005525	GO:GO:0016787	EnsemblPlantsGene:GSBRNA2T00050132001	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449
PFscan:PS51419	PANTHER:PTHR24073	PANTHER:PTHR24073:SF475	SMART:SM00173	SMART:SM00174	SMART:SM00175
SMART:SM00176	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231	TMHMM:TMhelix
UniParc:UPI0004EEC297	SEG:seg	:	:	:	:

Description

BnaA03g54420DBnaA03g54420D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GYT2]

Coordinates

chrLK032275:+:257599..259251

Molecular Weight (calculated)

28510.2 Da

IEP (calculated)

10.087

GRAVY (calculated)

-0.318

Length

258 amino acids

Sequence
(BLAST)

001: MRPSHRRRAR PLSLSSCSRG RKKTSWKKLG SLLSITLLFG SNVNMASVSA LAKFKLVFLG DQSVGKTSII TRFMYDKFDT SYQPTIGIDF LSKTMYLEDR
101: TVRLQLWDTA GQERFRSLIP SYIRDSSVAI VVYDVANRQT FLNIPKWIDD VHRERGGSGD VIIVLVGNKT DLVDKRQVSI SEGEEKGKEH GVMFIETSAK
201: ENFNIKALFR KIAAVLPGMD SYSSATKSDD MVDVNLKNTS SSSQGEQQGG GGGGGCSC

Best Arabidopsis Sequence Match ( AT4G39890.1 )
(BLAST)

001: MASVSPLAKF KLVFLGDQSV GKTSIITRFM YDKFDTTYQP TIGIDFLSKT MYLEDRTVRL QLWDTAGQER FRSLIPSYIR DSSVAIVVYD VSNRQTFLNT
101: SKWIEDVHRE RGQSNVIIVL VGNKTDLVEK RQVSISEGED KGKEYGVMFI ETSAKENFNI KALFRKIAAA LPGVDSYSLA TKSDDMVDVN LKTTSNSSQG
201: EQQGGAGGGG GCSC

Arabidopsis Description

RABH1CRABH1c [Source:UniProtKB/TrEMBL;Acc:A0A178V1R4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.