CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 3
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX69850	Canola	cytosol	98.54	98.54
CDX78373	Canola	cytosol	95.63	95.17
CDX81166	Canola	cytosol	95.63	95.17
AT5G10260.1	Thale cress	cytosol	92.72	92.27
CDY13772	Canola	cytosol	87.38	86.96
CDY48241	Canola	cytosol	87.38	86.54
CDY30479	Canola	cytosol	87.38	86.54
CDX95606	Canola	cytosol	87.38	86.54
CDX83425	Canola	cytosol	87.38	86.54
CDX74672	Canola	cytosol	87.38	86.54
GSMUA_Achr6P10400_001	Banana	cytosol	85.44	85.02
GSMUA_Achr2P22200_001	Banana	cytosol	84.47	84.06
Zm00001d006905_P001	Maize	mitochondrion	84.95	83.73
EER97564	Sorghum	cytosol	83.98	82.78
CDY63926	Canola	cytosol	81.55	78.5
CDX81264	Canola	cytosol	76.7	77.45
Os03t0191400-01	Rice	plasma membrane	78.16	74.88
KXG39985	Sorghum	cytosol	76.7	74.18
TraesCS4D01G305100.1	Wheat	cytosol	76.7	73.83
TraesCS4A01G407500.1	Wheat	cytosol	76.7	73.83
TraesCS4B01G306900.1	Wheat	cytosol	75.73	72.9
CDY18689	Canola	cytosol	74.76	70.97
CDY31610	Canola	mitochondrion	81.07	64.73
CDX76936	Canola	cytosol	81.07	60.73
Zm00001d028012_P001	Maize	cytosol, extracellular	65.05	60.36
HORVU4Hr1G078690.2	Barley	plastid	76.21	51.14
CDX99356	Canola	cytosol	37.86	38.81
CDY39412	Canola	cytosol	37.38	38.5
CDX82579	Canola	cytosol	37.38	38.5
CDY55834	Canola	cytosol, plastid	37.86	38.42
CDX78272	Canola	cytosol	37.86	38.42
CDY61658	Canola	cytosol	37.38	38.12
CDX78949	Canola	cytosol	36.89	37.81
CDY23153	Canola	cytosol	36.41	37.5
CDY13065	Canola	cytosol	36.41	37.5
CDY23446	Canola	cytosol	87.86	30.12
CDX78945	Canola	cytosol	7.28	29.41
CDY09323	Canola	extracellular, plastid, vacuole	15.05	27.19
CDY02896	Canola	endoplasmic reticulum, golgi	31.55	24.16

Protein Annotations

MapMan:22.8.1.8	Gene3D:3.40.50.300	GO:A0A078E7E4	EnsemblPlants:CDX96987	ProteinID:CDX96987	ProteinID:CDX96987.1
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525
GO:GO:0016787	EnsemblPlantsGene:GSBRNA2T00103935001	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449	PFscan:PS51419
PANTHER:PTHR24073	PANTHER:PTHR24073:SF630	SMART:SM00173	SMART:SM00174	SMART:SM00175	SMART:SM00176
SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231	UniParc:UPI0004EE4086	:

Description

BnaC09g46380D

Coordinates

chrLK031897:+:62612..64151

Molecular Weight (calculated)

22922.4 Da

IEP (calculated)

8.164

GRAVY (calculated)

-0.201

Length

206 amino acids

Sequence
(BLAST)

001: MAAVTPLAKY KLVFLGDQSV GKTSIITRFM YDKFDTTYQA TIGIDFLSKT MYMEDRTLRL QLWDTAGQER FRSLIPSYIR DSSVAVIVYD VANRQSFLNT
101: SKWIEDVRTE RGSDVIIVLV GNKTDLVDKR QVSIEEGDNK ARDFGVIFIE TSAKAGFNIK PLFRKISAAL PGMDTLSTKQ GDMVDVNLKS STNASQAEQQ
201: GGGCSC

Best Arabidopsis Sequence Match ( AT5G10260.1 )
(BLAST)

001: MASVSPLAKY KLVFLGDQSV GKTSIITRFM YDKFDTTYQA TIGIDFLSKT MYLEDRTVRL QLWDTAGQER FRSLIPSYIR DSSVAVIVYD VANRQSFLNT
101: SKWIEDVRTE RGSDVIIVLV GNKTDLVDKR QVSIEEGDNK ARDYGVIFIE TSAKAGFNIK PLFRKIAAAL PGMETLSSTK QEDMVDVNLK TSSNSAQGEQ
201: QRGGCAC

Arabidopsis Description

RABH1ERABH1e [Source:UniProtKB/TrEMBL;Acc:A0A178UPG4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.