CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
golgi 3
mitochondrion 2
cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	golgi
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	golgi, nucleus
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d006905_P001	Maize	mitochondrion	98.56	98.56
Solyc05g051570.2.1	Tomato	nucleus	89.47	90.34
GSMUA_Achr2P22200_001	Banana	cytosol	89.47	90.34
PGSC0003DMT400018619	Potato	cytosol	89.0	89.86
EER97251	Sorghum	cytosol	88.04	88.46
GSMUA_Achr6P10400_001	Banana	cytosol	87.56	88.41
Solyc03g078570.2.1	Tomato	cytosol	87.08	87.92
PGSC0003DMT400056111	Potato	cytosol	87.08	87.92
CDY13772	Canola	cytosol	86.6	87.44
Bra038535.1-P	Field mustard	cytosol	86.6	87.44
AT5G10260.1	Thale cress	cytosol	86.12	86.96
KRH59334	Soybean	endoplasmic reticulum	86.12	86.96
AT2G22290.1	Thale cress	cytosol	86.12	86.96
KRG97576	Soybean	cytosol	85.65	86.47
KRH43179	Soybean	cytosol	85.17	85.99
KRH31293	Soybean	cytosol	72.73	85.39
VIT_00s0665g00040.t01	Wine grape	extracellular	72.73	85.39
CDX96987	Canola	cytosol	82.78	83.98
CDX81166	Canola	cytosol	82.78	83.57
Bra006054.1-P	Field mustard	cytosol	82.78	83.57
CDX78373	Canola	cytosol	82.78	83.57
CDX69850	Canola	cytosol	81.82	83.01
Bra009046.1-P	Field mustard	cytosol	81.82	83.01
KXG39985	Sorghum	cytosol	79.43	77.93
CDX76936	Canola	cytosol	81.34	61.82
EER93694	Sorghum	cytosol	37.8	38.92
OQU93218	Sorghum	plastid	36.36	38.0
KXG24102	Sorghum	cytosol	36.84	37.75
KXG20675	Sorghum	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	34.45	36.0

Protein Annotations

MapMan:22.8.1.8	Gene3D:3.40.50.300	EntrezGene:8061565	UniProt:C5X2I3	EnsemblPlants:EER97564	ProteinID:EER97564
ProteinID:EER97564.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488
GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005794
GO:GO:0005829	GO:GO:0006810	GO:GO:0006890	GO:GO:0006891	GO:GO:0008150	GO:GO:0016787
GO:GO:0042147	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449	PFscan:PS51419	PANTHER:PTHR24073
PANTHER:PTHR24073:SF630	SMART:SM00173	SMART:SM00174	SMART:SM00175	SMART:SM00176	EnsemblPlantsGene:SORBI_3002G380300
SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231	UniParc:UPI0001A83999	RefSeq:XP_002461043.1
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr2:+:73638029..73640795

Molecular Weight (calculated)

23145.7 Da

IEP (calculated)

8.163

GRAVY (calculated)

-0.190

Length

209 amino acids

Sequence
(BLAST)

001: MAPAVVSALA KYKLVFLGDQ SVGKTSIITR FMYDKFDTTY QATIGIDFLS KTMYLEDRTV RLQLWDTAGQ ERFRSLIPSY IRDSSVAVVV YDVSNRQSFL
101: NTSKWIDEVR TERGGDVIIV LVGNKTDLVD KRQVSTEEGE SKAKELNVMF IETSAKAGFN IKPLFRKIAA ALPGMETLSA KSEDMVDVNL KPTSSQSNSQ
201: QQAGSGCAC

Best Arabidopsis Sequence Match ( AT2G44610.1 )
(BLAST)

001: MAPVSALAKY KLVFLGDQSV GKTSIITRFM YDKFDNTYQA TIGIDFLSKT MYLEDRTVRL QLWDTAGQER FRSLIPSYIR DSSVAVIVYD VASRQSFLNT
101: TKWIDEVRTE RGSDVIVVLV GNKTDLVDKR QVSIEEAEAK ARELNVMFIE TSAKAGFNIK ALFRKIAAAL PGMETLSSTK QEDMVDVNLK SSNANASLAQ
201: QQSGGCSC

Arabidopsis Description

RABH1BRas-related protein RABH1b [Source:UniProtKB/Swiss-Prot;Acc:O80501]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.