CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, endoplasmic reticulum, vacuole, cytosol, plasma membrane, golgi

Predictor Summary:

nucleus 1
extracellular 4
endoplasmic reticulum 4
vacuole 4
plasma membrane 4
golgi 4
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, secretory
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	cytosol
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os06t0687100-01	Rice	cytosol	80.5	80.5
TraesCS7D01G433800.1	Wheat	cytosol	82.5	79.33
TraesCS7B01G345100.1	Wheat	cytosol	81.5	78.74
HORVU1Hr1G013720.3	Barley	cytosol, mitochondrion, nucleus	72.0	70.94
VIT_11s0016g04020.t01	Wine grape	cytosol	60.0	69.36
KRH23467	Soybean	cytosol	37.5	66.96
GSMUA_Achr6P02970_001	Banana	cytosol	66.5	66.5
KRH60288	Soybean	mitochondrion	66.0	66.33
KRH41580	Soybean	cytosol	64.0	65.98
HORVU2Hr1G027490.2	Barley	cytosol, mitochondrion, nucleus	61.5	65.43
VIT_09s0002g04600.t01	Wine grape	cytosol	64.5	64.82
HORVU7Hr1G101140.7	Barley	mitochondrion	70.0	64.52
KRH09851	Soybean	cytosol, mitochondrion, plastid	63.5	63.5
GSMUA_Achr5P23540_001	Banana	endoplasmic reticulum	73.0	62.93
EER93694	Sorghum	cytosol	59.5	58.62
KXG24102	Sorghum	cytosol	58.5	57.35
OQU93218	Sorghum	plastid	50.5	50.5
EER97251	Sorghum	cytosol	36.0	34.62
EER97564	Sorghum	cytosol	36.0	34.45
KXG39985	Sorghum	cytosol	36.0	33.8

Protein Annotations

MapMan:22.8.1.6	Gene3D:3.40.50.300	UniProt:A0A194YL24	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0016787	EnsemblPlants:KXG20675	ProteinID:KXG20675
ProteinID:KXG20675.1	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449	PFscan:PS51419	PANTHER:PTHR24073
PANTHER:PTHR24073:SF683	SMART:SM00173	SMART:SM00174	SMART:SM00175	SMART:SM00176	EnsemblPlantsGene:SORBI_3010G237500
SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231	UniParc:UPI0007F25143	:

Description

hypothetical protein

Coordinates

chr10:+:58000786..58002306

Molecular Weight (calculated)

22181.4 Da

IEP (calculated)

6.778

GRAVY (calculated)

-0.150

Length

200 amino acids

Sequence
(BLAST)

001: MGSSAIIQAK LVLLGDLGAG KTSIVVRFAK GLYYECQEST IGAAFFSQVL SLDEATVKLD IWDTAGQERY HSLAPMYYRG AAAAIVVFDI TSTDSYVRAK
101: RWVDELQRQG NPHLVMALVA NKVDLQERRQ VGTQEAMDYA EANGLFFTET SAKTAQNVTE LFYELAERLV KLRPNRPAGM ILHDAQRSGD GSRWRFCCSG

Best Arabidopsis Sequence Match ( AT4G19640.1 )
(BLAST)

001: MAAAGNKSIN AKLVLLGDVG AGKSSLVLRF VKDQFVEFQE STIGAAFFSQ TLAVNDATVK FEIWDTAGQE RYHSLAPMYY RGAAAAIIVF DVTNQASFER
101: AKKWVQELQA QGNPNMVMAL AGNKSDLLDA RKVTAEDAQT YAQENGLFFM ETSAKTATNV KEIFYEIARR LPRVQPTENP TGMVLPDRAM DRAVSSSCCA

Arabidopsis Description

RABF2BRABF2B [Source:UniProtKB/TrEMBL;Acc:A0A178UXV7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.