CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 2
cytosol 2
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EES00346
KXG32770
KXG33232

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G19640.1	EES00346	AT2G27600.1	17468262
AT4G19640.1	KXG32770	AT4G33000.1	17825054
AT4G19640.1	KXG33232	AT4G33000.1	17825054

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d031179_P001	Maize	extracellular, mitochondrion	96.57	96.57
EER93694	Sorghum	cytosol	91.67	92.12
Os12t0631100-01	Rice	plasma membrane	90.69	91.13
HORVU5Hr1G002970.1	Barley	plastid	90.69	88.52
TraesCS5D01G022200.2	Wheat	golgi	89.71	87.56
TraesCS5B01G014400.1	Wheat	plastid	88.73	86.6
GSMUA_Achr7P16440_001	Banana	cytosol	81.86	82.67
CDY23153	Canola	cytosol	78.92	80.5
Solyc02g069370.2.1	Tomato	plastid	78.92	80.5
Bra027593.1-P	Field mustard	cytosol	78.43	80.4
CDY13065	Canola	cytosol	78.43	80.0
CDX82579	Canola	cytosol	78.43	80.0
GSMUA_Achr9P10010_001	Banana	cytosol	80.39	80.0
CDY39412	Canola	cytosol	77.94	79.5
Bra025091.1-P	Field mustard	cytosol	77.94	79.5
AT4G19640.1	Thale cress	cytosol	76.96	78.5
Bra013410.1-P	Field mustard	cytosol	76.47	78.0
CDX99356	Canola	cytosol	76.47	77.61
CDX78949	Canola	cytosol	76.47	77.61
KRG98019	Soybean	cytosol	75.98	77.5
PGSC0003DMT400050774	Potato	cytosol	74.02	75.5
AT5G45130.2	Thale cress	endoplasmic reticulum	75.98	74.52
PGSC0003DMT400055259	Potato	cytosol, plastid	71.08	72.5
GSMUA_Achr6P31600_001	Banana	cytosol	71.57	71.57
KRH20053	Soybean	endoplasmic reticulum	75.98	66.52
VIT_04s0079g00760.t01	Wine grape	cytosol	68.14	60.7
CDX78945	Canola	cytosol	14.71	58.82
KXG20675	Sorghum	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	57.35	58.5
CDY09323	Canola	extracellular, plastid, vacuole	28.92	51.75
OQU93218	Sorghum	plastid	50.0	51.0
EER97564	Sorghum	cytosol	37.75	36.84
KXG39985	Sorghum	cytosol	37.75	36.15
EER97251	Sorghum	cytosol	35.78	35.1

Protein Annotations

MapMan:22.8.1.6	Gene3D:3.40.50.300	UniProt:A0A1B6PEI1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0016787	EnsemblPlants:KXG24102	ProteinID:KXG24102
ProteinID:KXG24102.1	ProteinID:KXG24104.1	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449	PFscan:PS51419
PANTHER:PTHR24073	PANTHER:PTHR24073:SF622	SMART:SM00173	SMART:SM00174	SMART:SM00175	SMART:SM00176
EnsemblPlantsGene:SORBI_3008G185400	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231	UniParc:UPI0001C8082F

Description

hypothetical protein

Coordinates

chr8:+:61976466..61982123

Molecular Weight (calculated)

22149.4 Da

IEP (calculated)

8.179

GRAVY (calculated)

-0.105

Length

204 amino acids

Sequence
(BLAST)

001: MAAIAGGNKI RNAKLVLLGD VGAGKSSLVL RFVKGQFVEF QESTIGAAFF SQTLAVNDET VKFEIWDTAG QERYHSLAPM YYRGAAAAIV VYDITNAASF
101: TRAKKWVQEL QAQGNSNTIV ALAGNKADLL EARQVPAEEA KAYAQENSLF FMETSAKTAI NVNDVFYEIA KKLLQGQQVQ NPQGGMVLNQ RPPERMVSSS
201: SCCA

Best Arabidopsis Sequence Match ( AT5G45130.1 )
(BLAST)

001: MASSGNKNIN AKLVLLGDVG AGKSSLVLRF VKDQFVEFQE STIGAAFFSQ TLAVNDATVK FEIWDTAGQE RYHSLAPMYY RGAAAAIIVF DITNQASFER
101: AKKWVQELQA QGNPNMVMAL AGNKADLLDA RKVSAEEAEI YAQENSLFFM ETSAKTATNV KDIFYEIAKR LPRVQPAENP TGMVLPNGPG ATAVSSSCCA

Arabidopsis Description

ATRAB5ARAB homolog 1 [Source:TAIR;Acc:AT5G45130]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.