CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	cytosol
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
EER88310
EER93694
KXG24102
OQU93218

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G27600.1	OQU93218	AT3G54840.1	17468262
AT2G27600.1	EER93694	AT4G19640.1	17468262
AT2G27600.1	KXG24102	AT4G19640.1	17468262
AT2G27600.1	EER88310	AT4G26750.1	17468262

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d039904_P006	Maize	cytosol	98.85	99.08
Os01t0141100-02	Rice	cytosol, plasma membrane	68.35	98.35
Zm00001d008596_P005	Maize	cytosol	98.85	94.73
TraesCS3D01G053600.1	Wheat	cytosol	94.5	94.06
TraesCS3A01G054100.1	Wheat	cytosol	94.5	94.06
TraesCS3B01G065200.1	Wheat	cytosol	94.27	93.84
GSMUA_Achr4P24320_001	Banana	cytosol	86.01	91.91
GSMUA_Achr2P22550_001	Banana	cytosol	86.01	91.02
GSMUA_Achr3P01430_001	Banana	cytosol	85.09	90.27
Bra018640.1-P	Field mustard	cytosol	88.99	90.23
CDX93578	Canola	cytosol	88.99	90.23
KRH22691	Soybean	cytosol	84.63	90.22
KRH26619	Soybean	nucleus	90.14	90.14
CDX95077	Canola	cytosol	88.53	89.56
KRH25197	Soybean	cytosol	88.99	89.4
KRH30451	Soybean	cytosol	88.53	88.94
CDX83275	Canola	cytosol	88.07	88.68
CDY31186	Canola	cytosol	88.07	88.48
Bra000503.1-P	Field mustard	cytosol	87.84	88.45
VIT_13s0106g00490.t01	Wine grape	cytosol	87.84	88.25
Bra012009.1-P	Field mustard	cytosol	87.61	88.22
CDY04504	Canola	cytosol	87.39	88.19
CDX71438	Canola	cytosol	86.47	87.88
AT2G27600.1	Thale cress	cytosol	87.61	87.82
PGSC0003DMT400050194	Potato	cytosol	85.78	85.98
Solyc11g007170.1.1	Tomato	cytosol	79.59	85.89
Os01t0141300-00	Rice	cytosol	76.83	70.08
HORVU3Hr1G010300.1	Barley	cytosol, plastid	80.05	66.6
EES01499	Sorghum	cytosol	32.8	37.53
OQU87315	Sorghum	cytosol	34.4	37.22
EER87773	Sorghum	cytosol	35.09	31.22
EES01274	Sorghum	cytosol	35.09	29.48
KXG20883	Sorghum	endoplasmic reticulum	24.31	27.11
KXG19781	Sorghum	cytosol	33.03	27.07
KXG23422	Sorghum	nucleus	32.57	20.64
EES00021	Sorghum	endoplasmic reticulum	29.13	14.99
KXG32842	Sorghum	cytosol	26.38	14.84
KXG32925	Sorghum	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole	27.52	14.46
EES20020	Sorghum	endoplasmic reticulum	27.75	14.37
EES05524	Sorghum	plastid	27.52	12.16
OQU76102	Sorghum	mitochondrion	26.83	12.09
EES16128	Sorghum	cytosol, plastid	24.77	11.59
OQU79278	Sorghum	cytosol, plastid	24.08	11.39
EER92288	Sorghum	cytosol	27.06	10.63
OQU90457	Sorghum	cytosol, plastid	26.61	10.6
KXG29076	Sorghum	plastid	29.59	10.45

Protein Annotations

Gene3D:1.10.8.60	Gene3D:1.20.58.280	MapMan:22.5.4.4.1	Gene3D:3.40.50.300	EntrezGene:8073330	InterPro:AAA+_ATPase
InterPro:ATPase_AAA_CS	InterPro:ATPase_AAA_core	UniProt:C5XQ57	EnsemblPlants:EES00346	ProteinID:EES00346	ProteinID:EES00346.1
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005768	GO:GO:0005771
GO:GO:0006810	GO:GO:0007032	GO:GO:0007033	GO:GO:0008150	GO:GO:0009506	GO:GO:0009653
GO:GO:0009987	GO:GO:0010091	GO:GO:0016043	GO:GO:0016192	GO:GO:0016787	GO:GO:0016887
GO:GO:0030154	InterPro:MIT	InterPro:MIT_dom_sf	InterPro:P-loop_NTPase	PFAM:PF00004	PFAM:PF04212
PFAM:PF09336	ScanProsite:PS00674	PANTHER:PTHR23074	PANTHER:PTHR23074:SF137	SMART:SM00382	SMART:SM00745
EnsemblPlantsGene:SORBI_3003G077900	SUPFAM:SSF116846	SUPFAM:SSF52540	unigene:Sbi.15720	UniParc:UPI0001A84781	InterPro:Vps4_C
RefSeq:XP_002455226.1	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr3:+:6651977..6658547

Molecular Weight (calculated)

48392.5 Da

IEP (calculated)

8.050

GRAVY (calculated)

-0.517

Length

436 amino acids

Sequence
(BLAST)

001: MYSNFKEQAI EYVKQAVQED NAGNYVKAFP LYMNALEYFK THLKYEKNPK IKEAITAKFT EYLRRAEEIR AVLDEGGAGP GSNGGDAAVA TRPKTKGKDN
101: GDGGNGGDDS EQSKLRAGLN SAIITEKPNV KWNDVAGLES AKQALQEAVI LPVKFPQFFT GKRRPWRAFL LYGPPGTGKS YLAKAVATEA DSTFFSISSS
201: DLVSKWMGES EKLVANLFQM ARENAPSIIF IDEIDSLCGQ RGEGNESEAS RRIKTELLVQ MQGVGHNDDK VLVLAATNTP YALDQAVRRR FDKRIYIPLP
301: DLKARQHMFK VHLGDTPHSL TESDFESLAR RTDGFSGSDI AVCVKDVLFE PVRKTQDAMF FFKADGDMWM PCGPKQPGAV QTTMQELASK GLAAKILPPP
401: ISRTDFEKVL SRQRPTVSKK DLEVHERFTK EFGEEG

Best Arabidopsis Sequence Match ( AT2G27600.1 )
(BLAST)

001: MYSNFKEQAI EYVKQAVHED NAGNYNKAFP LYMNALEYFK THLKYEKNPK IREAITQKFT EYLRRAEEIR AVLDEGGSGP GSNGDAAVAT RPKTKPKDGE
101: GGGKDGEDPE QSKLRAGLNS AIVREKPNIK WSDVAGLESA KQALQEAVIL PVKFPQFFTG KRRPWRAFLL YGPPGTGKSY LAKAVATEAD STFFSVSSSD
201: LVSKWMGESE KLVSNLFEMA RESAPSIIFV DEIDSLCGTR GEGNESEASR RIKTELLVQM QGVGHNDEKV LVLAATNTPY ALDQAIRRRF DKRIYIPLPE
301: AKARQHMFKV HLGDTPHNLT EPDFEYLGQK TEGFSGSDVS VCVKDVLFEP VRKTQDAMFF FKSPDGTWMP CGPRHPGAIQ TTMQDLATKG LAEKIIPPPI
401: TRTDFEKVLA RQRPTVSKSD LDVHERFTQE FGEEG

Arabidopsis Description

SKD1Protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZNT0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.