Factsheet for PGSC0003DMT400050194

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400019238
PGSC0003DMT400050774
PGSC0003DMT400055259
PGSC0003DMT400057424

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G27600.1	PGSC0003DMT400019238	AT3G54840.1	17468262
AT2G27600.1	PGSC0003DMT400050774	AT4G19640.1	17468262
AT2G27600.1	PGSC0003DMT400055259	AT4G19640.1	17468262
AT2G27600.1	PGSC0003DMT400057424	AT4G26750.1	17468262

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g007170.1.1	Tomato	cytosol	92.64	99.75
GSMUA_Achr2P22550_001	Banana	cytosol	83.22	87.86
Os01t0141100-02	Rice	cytosol, plasma membrane	60.69	87.13
CDY31186	Canola	cytosol	86.9	87.1
CDX83275	Canola	cytosol	86.67	87.07
KRH26619	Soybean	nucleus	87.13	86.93
Bra000503.1-P	Field mustard	cytosol	86.44	86.84
GSMUA_Achr4P24320_001	Banana	cytosol	81.38	86.76
KRH25197	Soybean	cytosol	86.44	86.64
KRH30451	Soybean	cytosol	86.44	86.64
CDY04504	Canola	cytosol	85.98	86.57
KRH22691	Soybean	cytosol	81.38	86.55
CDX93578	Canola	cytosol	85.52	86.51
CDX71438	Canola	cytosol	85.29	86.48
PGSC0003DMT400019113	Potato	cytosol	85.75	86.34
Bra018640.1-P	Field mustard	cytosol	85.29	86.28
VIT_13s0106g00490.t01	Wine grape	cytosol	85.98	86.18
Bra012009.1-P	Field mustard	cytosol	85.52	85.91
GSMUA_Achr3P01430_001	Banana	cytosol	81.15	85.89
CDX95077	Canola	cytosol	85.06	85.85
EES00346	Sorghum	cytosol	85.98	85.78
AT2G27600.1	Thale cress	cytosol	85.29	85.29
Zm00001d039904_P006	Maize	cytosol	85.29	85.29
PGSC0003DMT400019119	Potato	cytosol	42.53	85.25
TraesCS3D01G053600.1	Wheat	cytosol	84.37	83.79
TraesCS3A01G054100.1	Wheat	cytosol	84.14	83.56
TraesCS3B01G065200.1	Wheat	cytosol	83.91	83.33
Zm00001d008596_P005	Maize	cytosol	85.06	81.32
Os02t0159900-01	Rice	plasma membrane	71.72	72.06
TraesCS6B01G161700.1	Wheat	cytosol	72.18	71.85
TraesCS6D01G122900.1	Wheat	cytosol	72.18	71.85
TraesCS6A01G133300.1	Wheat	cytosol	71.72	71.23
Os01t0141300-00	Rice	cytosol	71.72	65.27
HORVU3Hr1G010300.1	Barley	cytosol, plastid	70.8	58.78
PGSC0003DMT400071442	Potato	cytosol	27.82	37.12
PGSC0003DMT400054532	Potato	cytosol	32.18	36.08
PGSC0003DMT400042654	Potato	cytosol	36.55	30.7
PGSC0003DMT400031598	Potato	endoplasmic reticulum	23.68	28.69
PGSC0003DMT400047633	Potato	endoplasmic reticulum	24.6	28.31
PGSC0003DMT400013963	Potato	endoplasmic reticulum	24.37	27.04
PGSC0003DMT400052226	Potato	nucleus	31.95	20.81
PGSC0003DMT400031731	Potato	cytosol, endoplasmic reticulum	29.43	15.35
PGSC0003DMT400051401	Potato	endoplasmic reticulum	28.28	14.82

Protein Annotations

Gene3D:1.10.8.60	Gene3D:1.20.58.280	EntrezGene:102588422	MapMan:19.4.2.2	MapMan:22.5.4.4.1	Gene3D:3.40.50.300
InterPro:AAA+_ATPase	InterPro:ATPase_AAA_CS	InterPro:ATPase_AAA_core	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488
GO:GO:0005524	UniProt:M1BPW6	InterPro:MIT	InterPro:MIT_dom_sf	InterPro:P-loop_NTPase	PFAM:PF00004
PFAM:PF04212	PFAM:PF09336	EnsemblPlantsGene:PGSC0003DMG400019489	PGSC:PGSC0003DMG400019489	EnsemblPlants:PGSC0003DMT400050194	ScanProsite:PS00674
PANTHER:PTHR23074	PANTHER:PTHR23074:SF137	SMART:SM00382	SMART:SM00745	SUPFAM:SSF116846	SUPFAM:SSF52540
UniParc:UPI0002962EBB	InterPro:Vps4_C	RefSeq:XP_015170766.1	SEG:seg	:	:

Description

Salt-induced AAA-Type ATPase [Source:PGSC_GENE;Acc:PGSC0003DMG400019489]

Coordinates

chr11:+:5152642..5159046

Molecular Weight (calculated)

48344.3 Da

IEP (calculated)

8.050

GRAVY (calculated)

-0.521

Length

435 amino acids

Sequence
(BLAST)

001: MYSNFKEQAV AYVKQAVEED NAGNYAKAFS LYMNALEYFK THLKYEKNPK IKEAITQKFV EYLRRAEEIR SVLDEGGGGP TSNGDAAVAS RAKSKPKNGG
101: GGGEGDDSEN VKLRAGLNSA IVREKPNVKW NDVAGLESAK QALQEAVILP VKFPQFFTGK RRPWRAFLLY GPPGTGKSYL AKAVATEADS TFFSVSSSDL
201: VSKWMGESEK LVSNLFQMAR ESSPSIVFID EIDSLCGQRG EGSESEASRR IKTELLVQMQ GVGHDDDKKV LVLAATNTPY SLDQAIRRRF DKRIYIPLPD
301: LKARQHMFKV HLGDTPHNLT ESDFEQLARK TEGFSGSDIS VCVNEVLFEP VRKTQDAEFF IKTSDGLWVP CGPRQPGAIQ TNMQELAAKG LASKITPPPI
401: SIRDFDRVLW KQKPTVSKAD LEVHERFTKE FGEEG

Best Arabidopsis Sequence Match ( AT2G27600.1 )
(BLAST)

001: MYSNFKEQAI EYVKQAVHED NAGNYNKAFP LYMNALEYFK THLKYEKNPK IREAITQKFT EYLRRAEEIR AVLDEGGSGP GSNGDAAVAT RPKTKPKDGE
101: GGGKDGEDPE QSKLRAGLNS AIVREKPNIK WSDVAGLESA KQALQEAVIL PVKFPQFFTG KRRPWRAFLL YGPPGTGKSY LAKAVATEAD STFFSVSSSD
201: LVSKWMGESE KLVSNLFEMA RESAPSIIFV DEIDSLCGTR GEGNESEASR RIKTELLVQM QGVGHNDEKV LVLAATNTPY ALDQAIRRRF DKRIYIPLPE
301: AKARQHMFKV HLGDTPHNLT EPDFEYLGQK TEGFSGSDVS VCVKDVLFEP VRKTQDAMFF FKSPDGTWMP CGPRHPGAIQ TTMQDLATKG LAEKIIPPPI
401: TRTDFEKVLA RQRPTVSKSD LDVHERFTQE FGEEG

Arabidopsis Description

SKD1Protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZNT0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.