Factsheet for PGSC0003DMT400031598

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

plastid 3
mitochondrion 1
extracellular 4
endoplasmic reticulum 5
vacuole 4
plasma membrane 4
golgi 4
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	plastid
EpiLoc:	mitochondrion
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	nucleus, plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g083020.2.1	Tomato	plastid	97.49	97.49
PGSC0003DMT400047633	Potato	endoplasmic reticulum	71.87	68.25
TraesCS7D01G381400.1	Wheat	endoplasmic reticulum	70.47	68.01
TraesCS7A01G384900.1	Wheat	endoplasmic reticulum	70.47	67.83
TraesCS7B01G287800.1	Wheat	golgi	70.19	67.56
PGSC0003DMT400013963	Potato	endoplasmic reticulum	72.98	66.84
Zm00001d014775_P002	Maize	plastid	72.14	66.24
KXG20883	Sorghum	endoplasmic reticulum	70.75	64.96
GSMUA_Achr11P...	Banana	endoplasmic reticulum	70.19	64.95
HORVU0Hr1G021880.1	Barley	endoplasmic reticulum	70.19	63.96
Os06t0714500-01	Rice	plasma membrane	69.92	63.87
GSMUA_Achr4P05220_001	Banana	endoplasmic reticulum	68.8	63.66
HORVU7Hr1G091480.2	Barley	plastid	69.08	57.41
Zm00001d036410_P002	Maize	plastid	69.36	52.31
PGSC0003DMT400019119	Potato	cytosol	16.43	27.19
PGSC0003DMT400071442	Potato	cytosol	23.96	26.38
PGSC0003DMT400054532	Potato	cytosol	27.86	25.77
PGSC0003DMT400050194	Potato	cytosol	28.69	23.68
PGSC0003DMT400019113	Potato	cytosol	28.41	23.61
PGSC0003DMT400042654	Potato	cytosol	29.25	20.27
PGSC0003DMT400031731	Potato	cytosol, endoplasmic reticulum	42.62	18.35
PGSC0003DMT400051401	Potato	endoplasmic reticulum	42.06	18.19
PGSC0003DMT400052226	Potato	nucleus	30.36	16.32

Protein Annotations

Gene3D:1.10.8.60	EntrezGene:102592872	Gene3D:3.40.50.300	MapMan:35.1	InterPro:AAA+_ATPase	InterPro:ATPase_AAA_CS
InterPro:ATPase_AAA_core	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0016020	GO:GO:0016021	UniProt:M1AVW5	InterPro:P-loop_NTPase	PFAM:PF00004	EnsemblPlantsGene:PGSC0003DMG400012123
PGSC:PGSC0003DMG400012123	EnsemblPlants:PGSC0003DMT400031598	ScanProsite:PS00674	PANTHER:PTHR23074	PANTHER:PTHR23074:SF20	SMART:SM00382
SUPFAM:SSF52540	TMHMM:TMhelix	UniParc:UPI0002962AE2	RefSeq:XP_006343793.1	:	:

Description

ATPase family AAA domain-containing protein 1 [Source:PGSC_GENE;Acc:PGSC0003DMG400012123]

Coordinates

chr8:-:56554242..56559178

Molecular Weight (calculated)

39817.2 Da

IEP (calculated)

6.945

GRAVY (calculated)

-0.158

Length

359 amino acids

Sequence
(BLAST)

001: MAGSSSGKLI QDLILYAASA ALSMAVLFVG LRHLDPNREA SKKAIESRKH LSKRLGRTLI YTTPYEDMIT GDVVNPDHID VEFDSIGGLD GIKETLFQLA
101: ILPLRRPELF CHGKLLGPMK GVLLYGPPGT GKTMLAKAIA KESGAVFINV KVSTLMSKWF GDAQKLVAAV FSLAYKLQPA IIFIDEVDSF LGQRRSTDTE
201: MLTSMKTEFM ALWDGFTTDQ NARVMVLAAT NRPSDLDEAI IRRFSQAFEI GKPSLSDRTK ILKVVLKGER IEDNIDFDRL ASLCEGYTGS DILEACKQAA
301: FIPLREYLQD EKKGEQSQAP RPLSQSDIER ALAESKRTRV SAKKPTIVSF RLDDYEDLD

Best Arabidopsis Sequence Match ( AT4G27680.1 )
(BLAST)

001: MGGSSETKIL QELILYAASA AFSCLVLFAG LRHLDPNREA SKKALEHKKE ISKRLGRPLV QTNPYEDVIA CDVINPDHID VEFGSIGGLE TIKQALYELV
101: ILPLKRPELF AYGKLLGPQK GVLLYGPPGT GKTMLAKAIA KESGAVFINV RVSNLMSKWF GDAQKLVSAV FSLAYKLQPA IIFIDEVESF LGQRRSTDHE
201: AMANMKTEFM ALWDGFSTDP HARVMVLAAT NRPSELDEAI LRRLPQAFEI GIPDRRERAE ILKVTLKGER VEPDIDFDHI ARLCEGYTGS DIFELCKKAA
301: YFPIREILDA ERKGKPCLDP RPLSQLDLEK VLATSKKTQV AAGEYSLSSQ SSAWRGSREP DEVQAAISGI SKLLVSQIIN LQSESQDSWQ RDPEEDSR

Arabidopsis Description

26S proteasome regulatory particle chain RPT6-like protein [Source:UniProtKB/TrEMBL;Acc:Q9T090]
SUBAcon: [endoplasmic reticulum,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.